Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: PIN domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: PIN domain-like [88722]
    3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
  4. Superfamily: PIN domain-like [88723]
    link to SUPERFAMILY database - Superfamily

Families:

  1. PIN domain [89619] (7)
    Pfam 01850
    1. Hypothetical protein AF0591 [89620]
      1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89621] (1) picpic
    2. Hypothetical protein PAE2754 [102270]
      1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [102271] (2) picpic
    3. Hypothetical protein AF1683 [117492]
      1. Archaeoglobus fulgidus [TaxId: 2234] [117493] (1) picpic
        SQ O28590
    4. Trafficking protein B [142110]
      1. Neisseria gonorrhoeae [TaxId: 485] [142111] (9) picpic
        SQ Q5F882 1-138! SQ Q9RF91 1-138
    5. Hypothetical protein PH0500 [142112]
      1. Pyrococcus horikoshii [TaxId: 53953] [142113] (4) picpic
        SQ O58236 2-149
    6. Conserved hypothetical protein PAE0151 [142114]
      1. Pyrobaculum aerophilum [TaxId: 13773] [142115] (1) picpic
        SQ Q8ZZP3 1-130
    7. Hypothetical protein PF0355 [142116]
      PH0500 ortholog
      1. Pyrococcus furiosus [TaxId: 2261] [142117] (4) picpic
        SQ Q8U3V0 2-148
  2. 5' to 3' exonuclease catalytic domain [53045] (8)
    contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold
    1. T4 RNase H [53046]
      1. Bacteriophage T4 [TaxId: 10665] [53047] (2) picpic
    2. 5' to 3' exonuclease domain of DNA polymerase Taq [53048]
      1. Thermus aquaticus [TaxId: 271] [53049] (4) picpic
    3. T5 5'-exonuclease [53050]
      1. Bacteriophage T5 [TaxId: 10726] [53051] (4) picpic
    4. Flap endonuclease-1 (Fen-1 nuclease) [53052]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [53053] (2) picpic
      2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [82436] (1) picpic
      3. Archaeon Pyrococcus furiosus [TaxId: 2261] [53055] (1) picpic
      4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102272] (2) picpic
      5. Human (Homo sapiens) [TaxId: 9606] [142118] (3) picpic
        SQ P39748 2-217
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk