Structural Classification of Proteins
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Fold: PIN domain-like

3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: PIN domain-like [88722]
    3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145

Superfamilies:

  1. PIN domain-like [88723] (2)
    link to SUPERFAMILY database - Superfamily
    1. PIN domain [89619] (7)
      Pfam 01850
      1. Hypothetical protein AF0591 [89620]
        1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89621] (1) picpic
      2. Hypothetical protein PAE2754 [102270]
        1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [102271] (2) picpic
      3. Hypothetical protein AF1683 [117492]
        1. Archaeoglobus fulgidus [TaxId: 2234] [117493] (1) picpic
          SQ O28590
      4. Trafficking protein B [142110]
        1. Neisseria gonorrhoeae [TaxId: 485] [142111] (9) picpic
          SQ Q5F882 1-138! SQ Q9RF91 1-138
      5. Hypothetical protein PH0500 [142112]
        1. Pyrococcus horikoshii [TaxId: 53953] [142113] (4) picpic
          SQ O58236 2-149
      6. Conserved hypothetical protein PAE0151 [142114]
        1. Pyrobaculum aerophilum [TaxId: 13773] [142115] (1) picpic
          SQ Q8ZZP3 1-130
      7. Hypothetical protein PF0355 [142116]
        PH0500 ortholog
        1. Pyrococcus furiosus [TaxId: 2261] [142117] (4) picpic
          SQ Q8U3V0 2-148
    2. 5' to 3' exonuclease catalytic domain [53045] (8)
      contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold
      1. T4 RNase H [53046]
        1. Bacteriophage T4 [TaxId: 10665] [53047] (2) picpic
      2. 5' to 3' exonuclease domain of DNA polymerase Taq [53048]
        1. Thermus aquaticus [TaxId: 271] [53049] (4) picpic
      3. T5 5'-exonuclease [53050]
        1. Bacteriophage T5 [TaxId: 10726] [53051] (4) picpic
      4. Flap endonuclease-1 (Fen-1 nuclease) [53052]
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [53053] (2) picpic
        2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [82436] (1) picpic
        3. Archaeon Pyrococcus furiosus [TaxId: 2261] [53055] (1) picpic
        4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102272] (2) picpic
        5. Human (Homo sapiens) [TaxId: 9606] [142118] (3) picpic
          SQ P39748 2-217
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk