Structural Classification of Proteins

Family: Cytidine deaminase

: strand 5 is antiparallel to strand 4

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Cytidine deaminase-like [53926]
core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
Superfamily: Cytidine deaminase-like [53927]
contains extra C-terminal strand 5, order 21345
uperfamily
Family: Cytidine deaminase [53928]
strand 5 is antiparallel to strand 4

Protein Domains:

mono-domain cytidine deaminase [75327]
1. Bacillus subtilis [TaxId: 1423] [75328] (4)
  SQ P19079
  1. 1uwz
    complexed with thu, zn; mutant
    1. chain a [108081]
    2. chain b [108082]
  2. 1ux0
    complexed with thu, zn; mutant
    1. chain a [108083]
    2. chain b [108084]
  3. 1jtk
    complexed with thu, zn
    1. chain a [71862]
    2. chain b [71863]
  4. 1ux1
    complexed with thu, trs, zn; mutant
    1. chain a [108085]
    2. chain b [108086]
    3. chain c [108087]
    4. chain d [108088]
2. Human (Homo sapiens) [TaxId: 9606] [102711] (1)
  1. 1mq0
    complexed with brd, zn; mutant
    1. chain a [91389]
    2. chain b [91390]
3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [110764] (1)
  SQ Q06549
  1. 1r5t
    complexed with zn
    1. chain a [104812]
    2. chain b [104813]
    3. chain c [104814]
    4. chain d [104815]
4. Bacillus anthracis [TaxId: 1392] [142829] (2)
  SQ Q81LT6 1-124
  1. 2d30
    complexed with zn
    1. region a:1-124 [131190]
  2. 2d30
    automatically matched to 2D30 A:1-124
    complexed with zn
    1. region b:1-124 [131191]
5. Mouse (Mus musculus) [TaxId: 10090] [142830] (12)
  SQ P56389 10-146
  1. 2fr5
    automatically matched to 1ZAB A:10-146
    complexed with so4, tyu, zn
    1. region a:11-146 [133965]
  2. 2fr5
    automatically matched to 1ZAB A:10-146
    complexed with so4, tyu, zn
    1. region b:11-144 [133966]
  3. 2fr5
    automatically matched to 1ZAB A:10-146
    complexed with so4, tyu, zn
    1. region c:10-143 [133967]
  4. 2fr5
    automatically matched to 1ZAB A:10-146
    complexed with so4, tyu, zn
    1. region d:11-146 [133968]
  5. 2fr6
    automatically matched to 1ZAB A:10-146
    complexed with ctn, nh3, so4, uri, zn
    1. region a:10-146 [133969]
  6. 2fr6
    automatically matched to 1ZAB A:10-146
    complexed with ctn, nh3, so4, uri, zn
    1. region b:10-144 [133970]
  7. 2fr6
    automatically matched to 1ZAB A:10-146
    complexed with ctn, nh3, so4, uri, zn
    1. region c:10-142 [133971]
  8. 2fr6
    automatically matched to 1ZAB A:10-146
    complexed with ctn, nh3, so4, uri, zn
    1. region d:10-146 [133972]
  9. 1zab
    complexed with so4, urd, zn
    1. region a:10-146 [124818]
  10. 1zab
    automatically matched to 1ZAB A:10-146
    complexed with so4, urd, zn
    1. region b:10-143 [124819]
  11. 1zab
    automatically matched to 1ZAB A:10-146
    complexed with so4, urd, zn
    1. region c:10-144 [124820]
  12. 1zab
    automatically matched to 1ZAB A:10-146
    complexed with so4, urd, zn
    1. region d:10-146 [124821]
Two-domain cytidine deaminase [53929]
duplication: consists of two similar domains; contains extra helices in the N-terminal domain
1. Escherichia coli [TaxId: 562] [53930] (4)
  1. 1aln
    complexed with ctd, zn
    1. region a:1-150 [36020]
    2. region a:151-294 [36021]
  2. 1ctt
    complexed with dhz, zn
    1. region a:1-150 [36022]
    2. region a:151-294 [36023]
  3. 1ctu
    complexed with zeb, zn
    1. region a:1-150 [36024]
    2. region a:151-294 [36025]
  4. 1af2
    complexed with zn
    1. region a:1-150 [36026]
    2. region a:151-294 [36027]
Blasticidin-S deaminase [142831]
1. Aspergillus terreus [TaxId: 33178] [142832] (14)
  SQ P78986 2-126
  1. 2z3g
    automatically matched to d1wn5a1
    complexed with tre, zn
    1. region a:2-124 [153994]
  2. 2z3g
    automatically matched to d1wn5a1
    complexed with tre, zn
    1. region b:2-124 [153995]
  3. 2z3g
    automatically matched to d1wn5a1
    complexed with tre, zn
    1. region c:2-124 [153996]
  4. 2z3g
    automatically matched to d1wn5a1
    complexed with tre, zn
    1. region d:2-123 [153997]
  5. 2z3h
    automatically matched to d1wn5a1
    complexed with blo, zn
    1. region a:3-124 [153998]
  6. 2z3h
    automatically matched to d1wn5a1
    complexed with blo, zn
    1. region b:3-124 [153999]
  7. 2z3h
    automatically matched to d1wn5a1
    complexed with blo, zn
    1. region c:3-124 [154000]
  8. 2z3h
    automatically matched to d1wn5a1
    complexed with blo, zn
    1. region d:3-123 [154001]
  9. 1wn5
    complexed with cac, zn
    1. region a:2-126 [121082]
  10. 1wn5
    automatically matched to 1WN5 A:2-126
    complexed with cac, zn
    1. region b:2-126 [121083]
  11. 1wn5
    automatically matched to 1WN5 A:2-126
    complexed with cac, zn
    1. region c:2-126 [121084]
  12. 1wn5
    automatically matched to 1WN5 A:2-126
    complexed with cac, zn
    1. region d:2-126 [121085]
  13. 1wn6
    automatically matched to 1WN5 A:2-126
    complexed with ars, bst, zn
    1. region a:4-126 [121086]
  14. 1wn6
    automatically matched to 1WN5 A:2-126
    complexed with ars, bst, zn
    1. region b:3-126 [121087]