Structural Classification of Proteins
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Family: L-arabinose binding protein-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Periplasmic binding protein-like I [53821]
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    parallel beta-sheet of 6 strands, order 213456
  4. Superfamily: Periplasmic binding protein-like I [53822]
    Similar in architecture to the superfamily II but partly differs in topology
    link to SUPERFAMILY database - Superfamily
  5. Family: L-arabinose binding protein-like [53823]

Protein Domains:

  1. D-ribose-binding protein [53824]
    1. Escherichia coli, strain k-12 [TaxId: 562] [53825] (6)
      1. 2dri picpic
        complexed with rip
        1. chain a [35637] picpiclink
      2. 1drk picpic
        complexed with rip; mutant
        1. chain a [35638] picpiclink
      3. 1dbp picpic
        complexed with rip; mutant
        1. chain a [35639] picpiclink
      4. 1ba2 picpic
        mutant
        1. chain a [35640] picpiclink
        2. chain b [35641] picpiclink
      5. 1drj picpic
        complexed with rip; mutant
        1. chain a [35642] picpiclink
      6. 1urp picpic
        1. chain a [35643] picpiclink
        2. chain b [35644] picpiclink
        3. chain c [35645] picpiclink
        4. chain d [35646] picpiclink
  2. L-arabinose-binding protein [53826]
    1. Escherichia coli [TaxId: 562] [53827] (9)
      1. 8abp picpic
        complexed with gla, glb; mutant
        1. chain a [35647] picpiclink
      2. 1abe picpic
        complexed with ara, arb
        1. chain a [35648] picpiclink
      3. 6abp picpic
        complexed with ara, arb; mutant
        1. chain a [35650] picpiclink
      4. 7abp picpic
        complexed with fca, fcb; mutant
        1. chain a [35649] picpiclink
      5. 5abp picpic
        complexed with gla, glb
        1. chain a [35651] picpiclink
      6. 1abf picpic
        complexed with fca, fcb
        1. chain a [35652] picpiclink
      7. 1bap picpic
        complexed with ara, arb; mutant
        1. chain a [35654] picpiclink
      8. 1apb picpic
        complexed with fca, fcb; mutant
        1. chain a [35653] picpiclink
      9. 9abp picpic
        complexed with gla, glb; mutant
        1. chain a [35655] picpiclink
  3. D-allose-binding protein [53828]
    1. Escherichia coli [TaxId: 562] [53829] (3)
      1. 1gud picpic
        complexed with zn
        1. chain a [83326] picpiclink
        2. chain b [83327] picpiclink
      2. 1rpj picpic
        complexed with all, so4, zn
        1. chain a [35656] picpiclink
      3. 1gub picpic
        complexed with ni
        1. chain a [83325] picpiclink
  4. Galactose/glucose-binding protein [53830]
    1. Escherichia coli [TaxId: 562] [53831] (6)
      1. 2fvy picpic
        automatically matched to d1glg__
        complexed with act, ca, co2, glc, gol
        1. region a:2-306 [134227] picpiclink
      2. 2hph picpic
        automatically matched to d1glg__
        complexed with ca, glc
        1. region a:2-305 [136652] picpiclink
      3. 2fw0 picpic
        automatically matched to d1glg__
        complexed with ca, cit, mla, na
        1. region a:2-306 [134228] picpiclink
      4. 2qw1 picpic
        automatically matched to d1glga_
        complexed with 3mg, ca, na
        1. region a:2-306 [151396] picpiclink
      5. 2gbp picpic
        complexed with ca, glc
        1. chain a [35657] picpiclink
      6. 1glg picpic
        complexed with ca, gal
        1. chain a [35658] picpiclink
    2. Salmonella typhimurium, strain lt2 [TaxId: 90371] [53832] (3)
      1. 1gca picpic
        complexed with ca, gal
        1. chain a [35659] picpiclink
      2. 1gcg picpic
        complexed with ca
        1. chain a [35660] picpiclink
      3. 3gbp picpic
        complexed with ca, glc
        1. chain a [35661] picpiclink
  5. Amide receptor/negative regulator of the amidase operon (AmiC) [53833]
    1. Pseudomonas aeruginosa [TaxId: 287] [53834] (3)
      1. 1qo0 picpicxref
        1. chain a [35663] picpiclink
        2. chain b [35664] picpiclink
      2. 1pea picpic
        complexed with acm
        1. chain a [35662] picpiclink
      3. 1qnl picpic
        1. chain a [35665] picpiclink
  6. Quorum-sensing signal (autoinducer-2) binding protein LuxP [69622]
    1. Vibrio harveyi [TaxId: 669] [69623] (4)
      1. 1jx6 picpic
        complexed with ai2, ca
        1. chain a [67406] picpiclink
      2. 2hj9 picpicxrefxref
        automatically matched to d1jx6a_
        complexed with ai2
        1. region a:27-364 [136538] picpiclink
      3. 2hj9 picpicxrefxref
        automatically matched to d1jx6a_
        complexed with ai2
        1. region b:27-364 [136539] picpiclink
      4. 1zhh picpicxref
        automatically matched to d1jx6a_
        complexed with nhe
        1. region a:27-364 [125095] picpiclink
  7. Purine repressor (PurR), C-terminal domain [53835]
    1. Escherichia coli [TaxId: 562] [53836] (24)
      1. 1dbq picpic
        complexed with mg
        1. chain a [35666] picpiclink
        2. chain b [35667] picpiclink
      2. 1jhz picpic
        complexed with mg; mutant
        1. chain a [66731] picpiclink
        2. chain b [66732] picpiclink
      3. 1qpz picpicxref
        protein/DNA complex; complexed with hpa
        1. region a:59-340 [35673] picpiclink
      4. 1jft picpicxref
        complexed with hpa, po4; mutant
        1. region a:59-341 [66653] picpiclink
      5. 2pub picpicxref
        protein/DNA complex; complexed with ad2; mutant
        1. region a:59-340 [35679] picpiclink
      6. 2puc picpicxref
        protein/DNA complex; complexed with gun; mutant
        1. region a:59-340 [35684] picpiclink
      7. 1qqb picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35674] picpiclink
      8. 1vpw picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35680] picpiclink
      9. 1bdh picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35668] picpiclink
      10. 2pud picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35678] picpiclink
      11. 1zay picpicxref
        1. region a:59-340 [35681] picpiclink
      12. 2pug picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35683] picpiclink
      13. 2pue picpicxref
        protein/DNA complex; complexed with ad2; mutant
        1. region a:59-340 [35682] picpiclink
      14. 1wet picpicxref
        protein/DNA complex; complexed with gun
        1. region a:59-340 [35670] picpiclink
      15. 1jh9 picpicxref
        complexed with hpa, po4; mutant
        1. region a:59-340 [66711] picpiclink
      16. 1jfs picpicxref
        complexed with hpa; mutant
        1. region a:59-340 [66651] picpiclink
      17. 1bdi picpicxref
        protein/DNA complex; complexed with hpa
        1. region a:59-340 [35669] picpiclink
      18. 1pnr picpicxref
        protein/DNA complex; complexed with hpa
        1. region a:59-340 [35671] picpiclink
      19. 1qqa picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35675] picpiclink
      20. 2pua picpicxref
        protein/DNA complex; complexed with 6mp; mutant
        1. region a:59-340 [35685] picpiclink
      21. 1qp4 picpicxref
        protein/DNA complex; complexed with hpa
        1. region a:59-340 [35672] picpiclink
      22. 1qp7 picpicxref
        protein/DNA complex; complexed with hpa; mutant
        1. region a:59-340 [35676] picpiclink
      23. 1qp0 picpicxref
        protein/DNA complex; complexed with hpa
        1. region a:59-340 [35677] picpiclink
      24. 2puf picpicxref
        protein/DNA complex; complexed with gun; mutant
        1. region a:59-340 [35686] picpiclink
  8. Lac-repressor (lacR) core (C-terminal domain) [53837]
    1. Escherichia coli [TaxId: 562] [53838] (16)
      1. 1jye picpic
        complexed with gol; mutant
        1. chain a [67455] picpiclink
      2. 2p9h picpic
        automatically matched to d1jyea_
        complexed with ipt
        1. region a:62-330 [139580] picpiclink
      3. 2p9h picpic
        automatically matched to d1jyea_
        complexed with ipt
        1. region b:62-330 [139581] picpiclink
      4. 1efa picpicxref
        protein/DNA complex; complexed with npf; mutant
        1. region a:61-329 [35691] picpiclink
        2. region b:61-331 [35692] picpiclink
        3. region c:61-331 [35693] picpiclink
      5. 1tlf picpic
        complexed with emc, ipt
        1. chain a [35687] picpiclink
        2. chain b [35688] picpiclink
        3. chain c [35689] picpiclink
        4. chain d [35690] picpiclink
      6. 1jyf picpic
        complexed with gol
        1. chain a [67456] picpiclink
      7. 1lbi picpic
        1. chain a [35694] picpiclink
        2. chain b [35695] picpiclink
        3. chain c [35696] picpiclink
        4. chain d [35697] picpiclink
      8. 1jwl picpicxref
        complexed with npf; mutant
        1. region a:61-330 [67390] picpiclink
        2. region b:61-330 [67392] picpiclink
      9. 1jwl picpicxref
        complexed with npf; mutant
        1. chain c [67393] picpiclink
      10. 1lbh picpic
        complexed with ipt
        1. chain a [35698] picpiclink
        2. chain b [35699] picpiclink
        3. chain c [35700] picpiclink
        4. chain d [35701] picpiclink
      11. 2pe5 picpicxrefxrefxref
        automatically matched to d1jyea_
        complexed with 145; mutant
        1. region a:62-329 [149393] picpiclink
      12. 2pe5 picpicxrefxrefxref
        automatically matched to d1jyea_
        complexed with 145; mutant
        1. region b:62-329 [149395] picpiclink
      13. 2pe5 picpicxrefxrefxref
        automatically matched to d1jyea_
        complexed with 145; mutant
        1. region c:62-329 [149397] picpiclink
      14. 2paf picpic
        automatically matched to d1jyea_
        complexed with npf
        1. region a:62-330 [139641] picpiclink
      15. 2paf picpic
        automatically matched to d1jyea_
        complexed with npf
        1. region b:62-330 [139642] picpiclink
      16. 1lbg picpicxref
        protein/DNA complex
        1. region a:61-357 [35702] picpiclink
        2. region b:61-357 [35703] picpiclink
        3. region c:61-357 [35704] picpiclink
        4. region d:61-357 [35705] picpiclink
  9. Trehalose repressor, C-terminal domain [53839]
    1. Escherichia coli [TaxId: 562] [53840] (1)
      1. 1byk picpic
        complexed with t6p
        1. chain a [35706] picpiclink
        2. chain b [35707] picpiclink
  10. Leucine-,isoleucine-,valine-binding (LIV) protein [53841]
    1. Escherichia coli [TaxId: 562] [53842] (1)
      1. 2liv picpic
        1. chain a [35708] picpiclink
  11. Leucine-binding protein [53843]
    1. Escherichia coli [TaxId: 562] [53844] (4)
      1. 1usg picpic
        1. chain a [99864] picpiclink
      2. 1usi picpic
        complexed with phe
        1. chain a [99865] picpiclink
        2. chain c [99866] picpiclink
      3. 1usk picpic
        complexed with leu
        1. chain a [99867] picpiclink
        2. chain b [99868] picpiclink
        3. chain c [99869] picpiclink
        4. chain d [99870] picpiclink
      4. 2lbp picpic
        1. chain a [35709] picpiclink
  12. Hormone binding domain of the atrial natriuretic peptide receptor [53845]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [53846] (2)
      SQ P18910 29-454
      1. 1dp4 picpic
        complexed with cl, nag, so4
        1. chain a [35710] picpiclink
        2. chain c [35711] picpiclink
      2. 1t34 picpic
        complexed with cl, nag
        1. chain a [106299] picpiclink
        2. chain b [106300] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [64190] (2)
      1. 1jdp picpic
        complexed with a C-type natriuretic peptide, chain H
        complexed with cl, nag
        1. chain a [62906] picpiclink
        2. chain b [62907] picpiclink
      2. 1jdn picpic
        complexed with cl, fuc, man, nag
        1. chain a [62905] picpiclink
  13. Metabotropic glutamate receptor subtype 1 [53847]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [53848] (5)
      1. 1ewk picpic
        complexed with epe, glu, mg, nag
        1. chain a [35712] picpiclink
        2. chain b [35713] picpiclink
      2. 1isr picpic
        complexed with gd, glu
        1. chain a [71403] picpiclink
      3. 1iss picpic
        complexed with mcg
        1. chain a [71404] picpiclink
        2. chain b [71405] picpiclink
      4. 1ewt picpic
        complexed with nag, so4
        1. chain a [35714] picpiclink
        2. chain b [35715] picpiclink
      5. 1ewv picpic
        1. chain a [35716] picpiclink
        2. chain b [35717] picpiclink
  14. AI-2 receptor LsrB [110745]
    1. Salmonella typhi [TaxId: 90370] [110746] (2)
      SQ Q8Z2X8 27-340
      1. 1tjy picpic
        complexed with pav
        1. chain a [107062] picpiclink
      2. 1tm2 picpic
        1. chain a [107149] picpiclink
  15. Glucose-resistance amylase regulator CcpA, C-terminal domain [117740]
    1. Bacillus megaterium [TaxId: 1404] [117741] (11)
      SQ P46828 58-322 ! SQ P46828
      1. 2nzu picpicxref
        automatically matched to d1sxga_
        complexed with bg6, so4
        1. region g:58-332 [138854] picpiclink
      2. 1sxg picpic
        complexed with 171; mutant
        1. chain a [112141] picpiclink
        2. chain b [112142] picpiclink
        3. chain d [112143] picpiclink
        4. chain f [112144] picpiclink
        5. chain i [112145] picpiclink
        6. chain p [112146] picpiclink
      3. 1sxh picpic
        mutant
        1. chain a [112147] picpiclink
        2. chain d [112148] picpiclink
      4. 2hsg picpicxref
        automatically matched to d1sxga_
        1. region a:60-332 [136723] picpiclink
      5. 1sxi picpic
        complexed with mg; mutant
        1. chain a [112149] picpiclink
        2. chain b [112150] picpiclink
        3. chain d [112151] picpiclink
        4. chain g [112152] picpiclink
        5. chain i [112153] picpiclink
        6. chain k [112154] picpiclink
        7. chain l [112155] picpiclink
        8. chain m [112156] picpiclink
        9. chain n [112157] picpiclink
        10. chain r [112158] picpiclink
        11. chain t [112159] picpiclink
        12. chain w [112160] picpiclink
      6. 1rzr picpicxrefxref
        complexed with mg, so4
        1. region a:61-332 [111990] picpiclink
        2. region c:61-332 [111992] picpiclink
        3. region d:61-332 [111994] picpiclink
        4. region g:61-332 [111996] picpiclink
      7. 1zvv picpicxrefxrefxrefxrefxrefxref
        complexed with iod; mutant
        1. region a:60-332 [125728] picpiclink
      8. 1zvv picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1ZVV A:60-332
        complexed with iod; mutant
        1. region b:60-332 [125730] picpiclink
      9. 1zvv picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1ZVV A:60-332
        complexed with iod; mutant
        1. region g:60-332 [125732] picpiclink
      10. 2nzv picpicxref
        automatically matched to d1sxga_
        complexed with fbp, so4
        1. region g:58-332 [138856] picpiclink
      11. 2oen picpicxref
        automatically matched to d1sxga_
        1. region g:58-332 [139039] picpiclink
  16. YraM C-terminal domain [159804]
    1. Haemophilus influenzae [TaxId: 727] [159805] (1)
      SQ P45299 257-573
      HI1655
      1. 3ckm picpic
        complexed with bme, so4
        1. region a:257-573 [156739] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk