Structural Classification of Proteins
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Family: Glycerophosphoryl diester phosphodiesterase

Pfam 03009

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: PLC-like phosphodiesterases [51695]
    link to SUPERFAMILY database - Superfamily
  5. Family: Glycerophosphoryl diester phosphodiesterase [89508]
    Pfam 03009

Protein Domains:

  1. Hypothetical protein TM1621 [89509]
    1. Thermotoga maritima [TaxId: 2336] [89510] (1)
      1. 1o1z picpic
        structural genomics
        complexed with na
        1. chain a [86555] picpiclink
  2. Glycerophosphodiester phosphodiesterase GlpQ [110382]
    1. Escherichia coli [TaxId: 562] [110383] (3)
      SQ P09394
      1. 1ydy picpic
        automatically matched to d1t8qb_
        complexed with ca, gol
        1. region a:29-356 [123006] picpiclink
      2. 1ydy picpic
        automatically matched to d1t8qb_
        complexed with ca, gol
        1. region b:29-356 [123007] picpiclink
      3. 1t8q picpic
        Structural genomics target
        complexed with gol, mg
        1. chain a [106669] picpiclink
        2. chain b [106670] picpiclink
        3. chain c [106671] picpiclink
        4. chain d [106672] picpiclink
  3. Putative glycerophosphodiester phosphodiesterase TTHB141 [141864]
    1. Thermus thermophilus [TaxId: 274] [141865] (2)
      SQ Q53W25 8-224
      1. 1vd6 picpic
        automatically matched to 1V8E A:8-224
        complexed with gol
        1. region a:8-224 [119991] picpiclink
      2. 1v8e picpic
        1. region a:8-224 [119869] picpiclink
  4. Glycerophosphodiester phosphodiesterase UgpQ [141866]
    1. Agrobacterium tumefaciens [TaxId: 358] [141867] (4)
      SQ Q8U887 1-240
      1. 1zcc picpic
        complexed with act, so4
        1. region a:1-240 [124903] picpiclink
      2. 1zcc picpic
        automatically matched to 1ZCC A:1-240
        complexed with act, so4
        1. region c:1-234 [124904] picpiclink
      3. 1zcc picpic
        automatically matched to 1ZCC A:1-240
        complexed with act, so4
        1. region e:1-233 [124905] picpiclink
      4. 1zcc picpic
        automatically matched to 1ZCC A:1-240
        complexed with act, so4
        1. region f:1-235 [124906] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk