Structural Classification of Proteins
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Family: Anticodon-binding domain

barrel, closed; n=5, S=10

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: OB-fold [50198]
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. Superfamily: Nucleic acid-binding proteins [50249]
    link to SUPERFAMILY database - Superfamily
  5. Family: Anticodon-binding domain [50250]
    barrel, closed; n=5, S=10

Protein Domains:

  1. Aspartyl-tRNA synthetase (AspRS) [50251]
    this is N-terminal domain in prokaryotic enzymes and the first "visible" domain in eukaryotic enzymes
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [50252] (3)
      1. 1eov picpicxref
        1. region a:71-204 [25239] picpiclink
      2. 1asz picpicxref
        protein/tRNA complex; complexed with atp
        1. region a:68-204 [25240] picpiclink
        2. region b:68-204 [25241] picpiclink
      3. 1asy picpicxref
        protein/tRNA complex
        1. region a:68-204 [25242] picpiclink
        2. region b:68-204 [25243] picpiclink
    2. Archaeon Pyrococcus kodakaraensis [TaxId: 311400] [50253] (1)
      1. 1b8a picpicxref
        complexed with atp, mn
        1. region a:1-103 [25244] picpiclink
        2. region b:1001-1103 [25245] picpiclink
    3. Thermus thermophilus, AspRS-2 [TaxId: 274] [89323] (1)
      non-discriminating and archaeal-type enzyme
      1. 1n9w picpicxref
        1. region a:1-93 [85473] picpiclink
        2. region b:1-97 [85475] picpiclink
    4. Escherichia coli [TaxId: 562] [50254] (3)
      1. 1c0a picpicxrefxref
        1. region a:1-106 [25246] picpiclink
      2. 1il2 picpicxrefxref
        complexed with 1mg, 5mc, 5mu, amo, h2u, psu, so4
        1. region a:1-106 [66193] picpiclink
        2. region b:1001-1106 [66196] picpiclink
      3. 1eqr picpicxrefxref
        complexed with mg
        1. region a:1-106 [25247] picpiclink
        2. region b:1-106 [25248] picpiclink
        3. region c:1-106 [25249] picpiclink
    5. Thermus thermophilus, AspRS-1 [TaxId: 274] [50255] (3)
      1. 1l0w picpicxrefxref
        1. region a:1-104 [73426] picpiclink
        2. region b:1001-1104 [73429] picpiclink
      2. 1g51 picpicxrefxref
        complexed with amo, amp, so4
        1. region a:1-104 [25250] picpiclink
        2. region b:1001-1104 [25251] picpiclink
      3. 1efw picpicxrefxref
        protein/RNA complex; complexed with 2ma, 4su, 5mu, g7m, h2u, psu, quo
        1. region a:1-104 [25252] picpiclink
        2. region b:1-104 [25253] picpiclink
  2. Lysyl-tRNA synthetase (LysRS) [50256]
    1. Escherichia coli, gene lysS [TaxId: 562] [50257] (4)
      1. 1bbu picpicxref
        complexed with lys
        1. region a:11-154 [25254] picpiclink
      2. 1bbw picpicxref
        1. region a:11-153 [25255] picpiclink
      3. 1krt picpic
        1. chain a [25257] picpiclink
      4. 1krs picpic
        1. chain a [25256] picpiclink
    2. Escherichia coli, gene lysU [TaxId: 562] [50258] (5)
      1. 1e1o picpicxref
        complexed with gol, lys
        1. region a:11-153 [25258] picpiclink
      2. 1e22 picpicxref
        complexed with acp, gol, lys, mg
        1. region a:11-153 [25259] picpiclink
      3. 1e24 picpicxref
        complexed with atp, gol, lys, mn
        1. region a:11-153 [25260] picpiclink
      4. 1e1t picpicxref
        complexed with gol, lad, mg, pop
        1. region a:11-153 [25264] picpiclink
      5. 1lyl picpicxref
        1. region a:14-153 [25261] picpiclink
        2. region b:14-153 [25262] picpiclink
        3. region c:14-153 [25263] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk