Structural Classification of Proteins
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Family: YgdI/YgdR-like

Pfam 06004; DUF903, putative lipoprotein; both homohexameric and homoheptameric ring assemblies are observed in the crystals

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Sm-like fold [50181]
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. Superfamily: Sm-like ribonucleoproteins [50182]
    link to SUPERFAMILY database - Superfamily
  5. Family: YgdI/YgdR-like [159052]
    Pfam 06004; DUF903, putative lipoprotein; both homohexameric and homoheptameric ring assemblies are observed in the crystals

Protein Domains:

  1. Uncharacterized protein SO0963 [159053]
    1. Shewanella oneidensis [TaxId: 70863] [159054] (2) picpic
      SQ Q8EI81 25-76
  2. Uncharacterized protein YgdI [159055]
    1. Salmonella typhimurium [TaxId: 90371] [159056] (6) picpic
      SQ Q7CPV8 23-75
  3. Uncharacterized protein ECA1013 [159057]
    1. Erwinia carotovora [TaxId: 554] [159058] (7) picpic
      SQ Q6D8G1 21-73
  4. Putative outer membrane lipoprotein STM1585 [159059]
    1. Salmonella typhimurium [TaxId: 90371] [159060] (3) picpic
      SQ Q7CQI7 22-73
  5. Uncharacterized protein PSPPH2109 [159061]
    1. Pseudomonas syringae [TaxId: 317] [159062] (1) picpic
      SQ Q48JU9 23-74
  6. Hypothetical lipoprotein YgdR [159063]
    1. Escherichia coli [TaxId: 562] [159064] (1) picpic
      SQ P65294 23-72
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk