Structural Classification of Proteins
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Superfamily: TNF-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: TNF-like [49841]
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. Superfamily: TNF-like [49842]
    link to SUPERFAMILY database - Superfamily

Families:

  1. TNF-like [49843] (18)
    1. Extracellular domain of CD40 ligand [49844]
      1. Human (Homo sapiens) [TaxId: 9606] [49845] (2) picpic
    2. 30 kDa adipocyte complement-related protein [49846]
      1. Mouse (Mus musculus) [TaxId: 10090] [49847] (2) picpic
    3. Tumor necrosis factor (TNF) [49848]
      1. Human (Homo sapiens) [TaxId: 9606] [49849] (10) picpic
      2. Mouse (Mus musculus) [TaxId: 10090] [49850] (1) picpic
    4. Apoptosis-2 ligand, apo2l/TRAIL [49851]
      1. Human (Homo sapiens) [TaxId: 9606] [49852] (5) picpic
    5. TRANCE/RANKL cytokine [63721]
      1. Mouse (Mus musculus) [TaxId: 10090] [63722] (5) picpic
    6. Soluble part of TALL-1, sTALL-1 (BAFF) [69228]
      1. Human (Homo sapiens) [TaxId: 9606] [69229] (6) picpic
        also includes the PDB entry (1otz) that together with the entry (1p0t) provides the multimeric structure of the complex of this protein with its receptor, BAFF-R. In these entries protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
    7. Ectodysplasin A, Eda-a1 [101610]
      1. Human (Homo sapiens) [TaxId: 9606] [101611] (2) picpic
    8. Collagen NC1 trimerisation domain [69230]
      1. Human (Homo sapiens), isoform X [TaxId: 9606] [69231] (1) picpic
      2. Mouse (Mus musculus), isoform VIII [TaxId: 10090] [101612] (1) picpic
    9. Complement c1q globular head, A chain [101613]
      hetrotrimer of A, B and C chains
      1. Human (Homo sapiens) [TaxId: 9606] [101614] (5) picpic
    10. Complement c1q globular head, B chain [101615]
      hetrotrimer of A, B and C chains
      1. Human (Homo sapiens) [TaxId: 9606] [101616] (5) picpic
    11. Complement c1q globular head, C chain [101617]
      hetrotrimer of A, B and C chains
      1. Human (Homo sapiens) [TaxId: 9606] [101618] (5) picpic
    12. A proliferation-inducing ligand, APRIL [117117]
      1. Mouse (Mus musculus) [TaxId: 10090] [117118] (5) picpic
        SQ Q9D777 105-251 ! SQ Q9D777 105-241
    13. Tumor necrosis factor ligand superfamily member 4, OX40L [141127]
      1. Human (Homo sapiens) [TaxId: 9606] [141128] (1) picpic
        SQ P23510 58-183
      2. Mouse (Mus musculus) [TaxId: 10090] [141129] (3) picpic
        SQ P43488 58-185
    14. Glucocorticoid-induced TNF-related ligand, TNFSF18 [158982]
      1. Mouse (Mus musculus) [TaxId: 10090] [158983] (6) picpic
        SQ Q7TS55 51-173! SQ Q80YG2 49-173
      2. Human (Homo sapiens) [TaxId: 9606] [158984] (10) picpic
        SQ Q9UNG2 55-177! SQ Q9UNG2 57-172! SQ Q9UNG2 57-176
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk