Structural Classification of Proteins
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Superfamily: Galactose-binding domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Galactose-binding domain-like [49784]
    sandwich; 9 strands in 2 sheets; jelly-roll
  4. Superfamily: Galactose-binding domain-like [49785]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Galactose-binding domain [49786] (4)
    1. Galactose oxidase, N-terminal domain [49787]
      1. Dactylium dendroides [TaxId: 5132] [49788] (4) picpic
        SQ Q01745 42-680
      2. Fungi (Fusarium sp.) [TaxId: 29916] [69209] (5) picpic
        sequence identical to that of Dactylium dendroides
      3. Fusarium graminearum (Gibberella zeae) [TaxId: 5518] [158956] (3) picpic
    2. Sialidase, C-terminal domain [49789]
      1. Micromonospora viridifaciens [TaxId: 1881] [49790] (8) picpic
        SQ Q02834 47-647
  2. Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [49791] (4)
    1. C2 domain of factor V [49792]
      1. Human (Homo sapiens) [TaxId: 9606] [49793] (3) picpic
      2. Cow (Bos taurus) [TaxId: 9913] [110117] (1) picpic
        SQ Q28107 29-324,1566-2210
    2. C2 domain of factor VIII [49794]
      1. Human (Homo sapiens) [TaxId: 9606] [49795] (4) picpic
    3. B1 domain of neuropilin-1 [82016]
      1. Human (Homo sapiens) [TaxId: 9606] [82017] (4) picpic
  3. APC10-like [69210] (3)
    Pfam 03256
    1. APC10/DOC1 subunit of the anaphase-promoting complex [69211]
      1. Human (Homo sapiens) [TaxId: 9606] [69212] (1) picpic
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [74892] (1) picpic
    2. Placental protein 25, pp25 [117104]
      1. Human (Homo sapiens) [TaxId: 9606] [117105] (2) picpic
        SQ Q9Y547
  4. delta-Endotoxin, C-terminal domain [49796] (4)
    1. delta-Endotoxin, C-terminal domain [49797]
      1. Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444] [49798] (1) picpic
      2. Bacillus thuringiensis, CRY3bb1 [TaxId: 1428] [63716] (1) picpic
      3. Bacillus thuringiensis, CRYIA (A) [TaxId: 1428] [49799] (1) picpic
      4. Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339] [63717] (1) picpic
  5. Ephrin receptor ligand binding domain [49800] (2)
    1. Ligand-binding domain of the ephb2 receptor tyrosine kinase [49801]
      1. Mouse (Mus musculus) [TaxId: 10090] [49802] (3) picpic
        SQ P54763 27-207
    2. Ephrin type-B receptor 4 [158957]
      1. Human (Homo sapiens) [TaxId: 9606] [158958] (2) picpic
        SQ P54760 17-196
  6. beta-Galactosidase/glucuronidase, N-terminal domain [49803] (5)
    1. beta-Galactosidase [49804]
      1. Escherichia coli [TaxId: 562] [49805] (25) picpic
        SQ P00722
      2. Arthrobacter sp. c2-2 [TaxId: 192168] [141112] (6) picpic
        SQ Q8KRF6 4-219
    2. beta-Glucuronidase [49806]
      1. Human (Homo sapiens) [TaxId: 9606] [49807] (1) picpic
    3. Beta-mannosidase [158959]
      1. Bacteroides thetaiotaomicron [TaxId: 818] [158960] (18) picpic
        SQ Q8AAK6 28-219
    4. Exochitosanase CsxA [158961]
      1. Amycolatopsis orientalis [TaxId: 31958] [158962] (2) picpic
        SQ Q56F26 42-225
  7. Chondroitin ABC lyase I, N-terminal domain [89236] (1)
    1. Chondroitin ABC lyase I, N-terminal domain [89237]
      1. Proteus vulgaris [TaxId: 585] [89238] (1) picpic
  8. CBM4/9 [74893] (3)
    1. Cellulose-binding domain of cellulase C [49809]
      1. Cellulomonas fimi [TaxId: 1708] [49810] (4) picpic
    2. Carbohydrate binding module from a thermostable xylanase [74894]
      1. Rhodothermus marinus [TaxId: 29549] [74895] (2) picpic
    3. Carbohydrate binding module from laminarinase 16A [82018]
      1. Thermotoga maritima [TaxId: 2336] [82019] (1) picpic
  9. Family 6 carbohydrate binding module, CBM6 [69213] (4)
    1. Carbohydrate binding module from xylanase U [69214]
      1. Clostridium thermocellum [TaxId: 1515] [69215] (2) picpic
    2. Cellulase B (lichenase 5a) [101583]
      1. Cellvibrio mixtus [TaxId: 39650] [101584] (6) picpic
    3. Putative xylanase [89239]
      1. Clostridium stercorarium [TaxId: 1510] [89240] (8) picpic
        SQ P33558 243-374, 384-512
    4. Hypothetical protein BH0236 [117106]
      1. Bacillus halodurans [TaxId: 86665] [117107] (3) picpic
        SQ Q9KG76 790-923
  10. CBM15 [69216] (1)
    1. Xylan-binding module from xylanase 10c [69217]
      1. Cellvibrio japonicus [TaxId: 155077] [69218] (3) picpic
        synonym: Pseudomonas cellulosa
  11. Family 17 carbohydrate binding module, CBM17 [69219] (1)
    1. Endo-1,4-beta glucanase EngF [69220]
      1. Clostridium cellulovorans [TaxId: 1493] [69221] (2) picpic
  12. CBM22 [49811] (1)
    CBM family 22, formerly x6b domain
    1. Xylan-binding domain [49812]
      1. Clostridium thermocellum [TaxId: 1515] [49813] (3) picpic
  13. Family 27 carbohydrate binding module, CBM27 [89241] (2)
    1. Beta-mannosidase, C-terminal domain [89242]
      1. Thermotoga maritima [TaxId: 2336] [89243] (3) picpic
    2. Beta-1,4-mannanase ManA [110118]
      1. Caldicellulosiruptor saccharolyticus [TaxId: 44001] [110119] (2) picpic
        SQ P77847 36-220
  14. Family 29 carbohydrate binding module, CBM29 [89244] (1)
    1. Non-catalytic protein 1, Ncp1 [89245]
      1. Piromyces equi [TaxId: 99929] [89246] (4) picpic
        SQ Q9C171 337-477
  15. Fucose binding lectin [74896] (1)
    1. Fucose binding lectin [74897]
      1. European eel (Anguilla anguilla) [TaxId: 7936] [74898] (1) picpic
  16. N-terminal domain of xrcc1 [49814] (1)
    1. N-terminal domain of xrcc1 [49815]
      the single-strand break repair protein
      1. Human (Homo sapiens) [TaxId: 9606] [49816] (2) picpic
  17. F-box associated region, FBA [101585] (1)
    1. F-box only protein 2 [101586]
      1. Mouse (Mus musculus) [TaxId: 10090] [101587] (3) picpic
  18. Allantoicase repeat [101588] (1)
    1. Allantoicase [101589]
      duplication: tandem repeat of two similar domains
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101590] (2) picpic
        Yir029w
  19. PepX C-terminal domain-like [69222] (4)
    1. Bacterial cocaine esterase, C-terminal domain [69223]
      1. Rhodococcus sp. mb1 [TaxId: 51612] [69224] (4) picpic
    2. Alpha-amino acid ester hydrolase [89247]
      1. Xanthomonas citri [TaxId: 346] [89248] (1) picpic
      2. Acetobacter pasteurianus [TaxId: 438] [101591] (29) picpic
    3. X-Prolyl dipeptidyl aminopeptidase PepX [82020]
      1. Lactococcus lactis [TaxId: 1358] [82021] (1) picpic
  20. PA-IL, galactose-binding lectin 1 [82022] (1)
    a truncated form of this fold lacking one of the N-terminal strands
    1. PA-IL, galactose-binding lectin 1 [82023]
      1. Pseudomonas aeruginosa [TaxId: 287] [82024] (27) picpic
  21. Proprotein convertase P-domain [89249] (3)
    a truncated form of this fold lacking one of the N-terminal strands
    1. Kexin, C-terminal domain [89250]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89251] (4) picpic
    2. Furin, C-terminal domain [89252]
      1. Mouse (Mus musculus) [TaxId: 10090] [89253] (1) picpic
    3. Alkaline serine protease kp-43, C-terminal domain [110120]
      1. Bacillus sp. KSM-KP43 [TaxId: 109322] [110121] (3) picpic
        SQ Q93UV9 207-640
  22. Family 28 carbohydrate binding module, CBM28 [110122] (1)
    1. Endoglucanase (alkaline cellulase) [110123]
      1. Bacillus sp. 1139 [TaxId: 1411] [110124] (1) picpic
        SQ P06564 578-761
  23. Family 30 carbohydrate binding module, CBM30 (PKD repeat) [110125] (1)
    1. Endoglucanase CelJ [110126]
      1. Clostridium thermocellum [TaxId: 1515] [110127] (7) picpic
        SQ P71140 34-228 # chain B coverage
  24. Rhamnogalacturonase B, RhgB, C-terminal domain [110128] (1)
    1. Rhamnogalacturonase B, RhgB, C-terminal domain [110129]
      1. Aspergillus aculeatus [TaxId: 5053] [110130] (1) picpic
        SQ Q00019
  25. Hypothetical protein AT3g04780/F7O18_27 [117108] (1)
    Pfam 06201; DUF1000
    1. Hypothetical protein AT3g04780/F7O18_27 [117109]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117110] (1) picpic
        SQ Q93Z56
  26. Beta-galactosidase LacA, domains 4 and 5 [117111] (1)
    duplication: tandem repeat of two similar domains; some sequence similarity to the beta-Galactosidase/glucuronidase N-terminal domain (scop_fa 49803)
    1. Beta-galactosidase LacA, domains 4 and 5 [117112]
      1. Penicillium sp. [TaxId: 5081] [117113] (2) picpic
        SQ Q700S9 41-1011
  27. Family 36 carbohydrate binding module, CBM36 [117114] (1)
    1. Endo-1,4-beta-xylanase D [117115]
      1. Paenibacillus polymyxa [TaxId: 1406] [117116] (2) picpic
        SQ P45796 516-635
  28. Extended PAW domain [141113] (1)
    single domain; the N-terminal half is covered by Pfam 04721; DUF750 (Smart 00613; PAW), the C-terminal half by PfamB 028386
    1. Peptide:N-glycanase, PNGase, C-terminal domain [141114]
      1. Mouse (Mus musculus) [TaxId: 10090] [141115] (4) picpic
        SQ Q9JI78 454-561! SQ Q9JI78 472-651
  29. CBM11 [141116] (1)
    Pfam 03425; Carbohydrate binding domain (family 11)
    1. Endoglucanase H [141117]
      1. Clostridium thermocellum [TaxId: 1515] [141118] (1) picpic
        SQ P16218 655-821
  30. beta-mannanase CBM [141119] (1)
    1. Endo-beta-1,4-mannanase C-terminal domain [141120]
      1. Bacillus sp. JAMB-602 [TaxId: 244966] [141121] (1) picpic
        SQ Q4W8M3 340-490
  31. YxiM N-terminal domain-like [158963] (1)
    PfamB 038265
    1. Hypothetical protein YxiM [158964]
      1. Bacillus subtilis [TaxId: 1423] [158965] (1) picpic
        SQ P42304 29-174
  32. NPCBM-like [158966] (2)
    Pfam 08305
    1. Uncharacterized Protein CPF2129 [158967]
      1. Clostridium perfringens [TaxId: 1502] [158968] (3) picpic
        SQ Q0TP83 906-1050
    2. Uncharacterized protein CPE0329 [158969]
      1. Clostridium perfringens [TaxId: 1502] [158970] (5) picpic
        SQ Q8XNK4 34-204
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk