Structural Classification of Proteins
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Family: PUA domain

RNA-binding domain

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: PUA domain-like [88696]
    pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other
  4. Superfamily: PUA domain-like [88697]
    link to SUPERFAMILY database - Superfamily
  5. Family: PUA domain [88698]
    RNA-binding domain

Protein Domains:

  1. Pseudouridine synthase II TruB, C-terminal domain [88699]
    1. Escherichia coli [TaxId: 562] [88700] (3)
      1. 1k8w picpicxref
        complexed with fhu, so4; mutant
        1. region a:251-312 [83094] picpiclink
      2. 1r3f picpicxref
        1. region a:251-314 [96909] picpiclink
      3. 1zl3 picpicxref
        automatically matched to d1r3fa1
        complexed with so4, ud5; mutant
        1. region a:251-310 [125235] picpiclink
    2. Thermotoga maritima [TaxId: 2336] [102023] (8)
      1. 1r3e picpicxref
        complexed with fhu
        1. region a:238-318 [96907] picpiclink
      2. 2ab4 picpicxref
        complexed with fhu, zn; mutant
        1. region a:229-308 [126505] picpiclink
      3. 1ze1 picpicxrefxrefxrefxref
        automatically matched to d1r3ea1
        complexed with mg
        1. region a:229-308 [124962] picpiclink
      4. 1ze1 picpicxrefxrefxrefxref
        automatically matched to d1r3ea1
        complexed with mg
        1. region b:229-308 [124964] picpiclink
      5. 1ze1 picpicxrefxrefxrefxref
        automatically matched to d1r3ea1
        complexed with mg
        1. region c:229-308 [124966] picpiclink
      6. 1ze1 picpicxrefxrefxrefxref
        automatically matched to d1r3ea1
        complexed with mg
        1. region d:229-308 [124968] picpiclink
      7. 1ze2 picpicxrefxref
        automatically matched to d1r3ea1
        complexed with fhu
        1. region a:229-308 [124970] picpiclink
      8. 1ze2 picpicxrefxref
        automatically matched to d1r3ea1
        complexed with fhu
        1. region b:229-308 [124972] picpiclink
    3. Mycobacterium tuberculosis [TaxId: 1773] [102024] (1)
      1. 1sgv picpicxref
        1. region a:236-292 [98858] picpiclink
        2. region b:236-294 [98860] picpiclink
    4. Archaeon Methanococcus jannaschii [TaxId: 2190] [141698] (1)
      SQ Q57612 247-331
      1. 2apo picpicxrefxref
        complexed with k, zn
        1. region a:247-331 [127133] picpiclink
    5. Archaeon Pyrococcus furiosus [TaxId: 2261] [141699] (4)
      SQ Q7LWY0 250-333
      1. 2ey4 picpicxrefxrefxrefxrefxrefxref
        complexed with zn
        1. region a:253-336 [132578] picpiclink
      2. 2ey4 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2EY4 A:253-336
        complexed with zn
        1. region b:253-336 [132580] picpiclink
      3. 2hvy picpicxrefxrefxrefxref
        automatically matched to 2EY4 A:253-336
        complexed with atp, zn; mutant
        1. region a:253-336 [136817] picpiclink
      4. 2rfk picpicxrefxrefxref
        automatically matched to d2ey4a1
        complexed with zn; mutant
        1. region a:253-336 [151996] picpiclink
  2. Archaeosine tRNA-guanine transglycosylase, C3 domain [88701]
    the last of the 3 additional C-terminal domains to the TGT-like domain
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [88702] (4)
      1. 1iq8 picpicxrefxref
        complexed with mg, zn
        1. region a:506-582 [83074] picpiclink
        2. region b:506-582 [83076] picpiclink
      2. 1it7 picpicxrefxref
        complexed with gun, mg, zn
        1. region a:506-582 [83078] picpiclink
        2. region b:506-582 [83080] picpiclink
      3. 1it8 picpicxrefxref
        complexed with mg, pq0, zn
        1. region a:506-582 [83082] picpiclink
        2. region b:506-582 [83084] picpiclink
      4. 1j2b picpicxrefxref
        complexed with mg, zn
        1. region a:506-582 [84010] picpiclink
        2. region b:506-582 [84013] picpiclink
  3. Hypothetical protein Ta1423, C-terminal domain [102025]
    this protein is related to the C-terminal part (domains C2 and C3) of Archaeosine tRNA-guanine transglycosylase
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [102026] (1)
      1. 1q7h picpicxref
        structural genomics
        complexed with zn
        1. region a:69-153 [96042] picpiclink
  4. Nip7p homolog, C-terminal domain [110337]
    1. Human (Homo sapiens) [TaxId: 9606] [110338] (2)
      SQ Q9Y221
      1. 1sqw picpicxref
        automatically matched to d1t5ya1
        1. region a:95-170 [119033] picpiclink
      2. 1t5y picpicxref
        1. region a:95-170 [106495] picpiclink
  5. Hypothetical protein APE0525, C-terminal domain [141700]
    1. Archaeon Aeropyrum pernix [TaxId: 56636] [141701] (3)
      SQ Q9YEQ6 91-186
      1. 2cx1 picpicxref
        automatically matched to 1ZS7 A:91-186
        complexed with tla
        1. region a:91-183 [130967] picpiclink
      2. 1zs7 picpicxref
        complexed with k, po4
        1. region a:91-186 [125593] picpiclink
      3. 2cx0 picpicxref
        automatically matched to 1ZS7 A:91-186
        complexed with so4
        1. region a:91-183 [130965] picpiclink
  6. Uncharacterized protein AF0587 [159363]
    1. Archaeoglobus fulgidus [TaxId: 2234] [159364] (1)
      SQ O29668 460-527
      1. 2q07 picpicxrefxref
        1. region a:460-527 [149981] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk