Structural Classification of Proteins

Fold: PUA domain-like

: pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: PUA domain-like [88696]
pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other

Superfamilies:

PUA domain-like [88697] (13)
uperfamily
1. PUA domain [88698] (10)
  RNA-binding domain
  1. Pseudouridine synthase II TruB, C-terminal domain [88699]
    1. Escherichia coli [TaxId: 562] [88700] (3)
    2. Thermotoga maritima [TaxId: 2336] [102023] (8)
    3. Mycobacterium tuberculosis [TaxId: 1773] [102024] (1)
    4. Archaeon Methanococcus jannaschii [TaxId: 2190] [141698] (1)
      SQ Q57612 247-331
    5. Archaeon Pyrococcus furiosus [TaxId: 2261] [141699] (4)
      SQ Q7LWY0 250-333
  2. Archaeosine tRNA-guanine transglycosylase, C3 domain [88701]
    the last of the 3 additional C-terminal domains to the TGT-like domain
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [88702] (4)
  3. Hypothetical protein Ta1423, C-terminal domain [102025]
    this protein is related to the C-terminal part (domains C2 and C3) of Archaeosine tRNA-guanine transglycosylase
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [102026] (1)
  4. Nip7p homolog, C-terminal domain [110337]
    1. Human (Homo sapiens) [TaxId: 9606] [110338] (2)
      SQ Q9Y221
  5. Hypothetical protein APE0525, C-terminal domain [141700]
    1. Archaeon Aeropyrum pernix [TaxId: 56636] [141701] (3)
      SQ Q9YEQ6 91-186
  6. Uncharacterized protein AF0587 [159363]
    1. Archaeoglobus fulgidus [TaxId: 2234] [159364] (1)
      SQ O29668 460-527
2. ATP sulfurylase N-terminal domain [63801] (5)
  contains extra structures; some similarity to the PK beta-barrel domain
  1. ATP sulfurylase N-terminal domain [63802]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [63803] (8)
    2. Fungus (Penicillium chrysogenum) [TaxId: 5076] [63804] (2)
    3. Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843] [69296] (1)
    4. Thermus thermophilus [TaxId: 274] [102027] (1)
    5. Human (Homo sapiens) [TaxId: 9606] [141702] (6)
      SQ O43252 229-389
3. YggJ N-terminal domain-like [89451] (3)
  1. Hypothetical protein HI0303 [89452]
    1. Haemophilus influenzae [TaxId: 727] [89453] (2)
  2. Hypothetical protein YqeU [102028]
    1. Bacillus subtilis [TaxId: 1423] [102029] (1)
  3. Hypothetical protein TTHA0657 (TT1575) [117346]
    1. Thermus thermophilus [TaxId: 274] [117347] (3)
      SQ Q5SKI6
4. Hypothetical protein EF3133 [110339] (1)
  Pfam 06171; DUF984
  1. Hypothetical protein EF3133 [110340]
    1. Enterococcus faecalis [TaxId: 1351] [110341] (1)
      SQ Q82ZD1
5. Hypothetical protein TTHA0113 [117348] (1)
  Pfam 04266; DUF437
  1. Hypothetical protein TTHA0113 [117349]
    1. Thermus thermophilus [TaxId: 274] [117350] (2)
      SQ Q5SM30
6. ProFAR isomerase associated domain [117351] (2)
  Pfam 07060; DUF1530
  1. Hypothetical protein PF0470 [117352]
    1. Pyrococcus furiosus [TaxId: 2261] [117353] (1)
      SQ Q8U3J6
  2. Hypothetical protein PF0455 [117354]
    1. Pyrococcus furiosus [TaxId: 2261] [117355] (1)
      SQ Q8U3L1
7. yqfB-like [117356] (1)
  Pfam 06164; DUF978
  1. Hypothetical protein YqfB [117357]
    1. Escherichia coli [TaxId: 562] [117358] (1)
      SQ P67603
8. Atu2648/PH1033-like [141703] (6)
  Pfam 01878; DUF55
  1. Hypothetical protein PP5205 [141704]
    1. Pseudomonas putida kt2440 [TaxId: 160488] [141705] (3)
      SQ Q88CH6 2-149
  2. Hypothetical protein PH1033 [141706]
    1. Pyrococcus horikoshii [TaxId: 53953] [141707] (3)
      SQ O58764 1-145
  3. Hypothetical protein PSPTO5229 [141708]
    PP5205 ortholog
    1. Pseudomonas syringae [TaxId: 317] [141709] (1)
      SQ Q87UR7 2-149
  4. Hypothetical protein RPA0253 [141710]
    1. Rhodopseudomonas palustris [TaxId: 1076] [141711] (1)
      SQ Q6ND56 2-137
  5. Hypothetical protein Atu2648 [141712]
    1. Agrobacterium tumefaciens [TaxId: 358] [141713] (1)
      SQ Q8UC50 2-147
  6. Hypothetical protein LmjF36.6870 [141714]
    1. Leishmania major [TaxId: 5664] [141715] (1)
      SQ Q4Q067 7-163
9. Hypothetical RNA methyltransferase domain (HRMD) [141716] (3)
  N-terminal part of Pfam 03602, structurally similar to PUA domain family
  1. Hypothetical protein TTHA1280, N-terminal domain [141717]
    1. Thermus thermophilus [TaxId: 274] [141718] (10)
      SQ Q5SIT4 1-164
  2. Hypothetical protein SMu776, N-terminal domain [141719]
    1. Streptococcus mutans [TaxId: 1309] [141720] (1)
      SQ Q8DUW5 1-68
  3. Hypothetical protein PH1915, N-terminal domain [141721]
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [141722] (2)
      SQ O59578 1-72
10. LON domain-like [141723] (2)
  Pfam 02190
  1. ATP-dependent protease La (Lon), N-terminal domain [141724]
    1. Escherichia coli [TaxId: 562] [141725] (8)
      SQ P0A9M0 8-117
  2. Hypothetical protein BPP1347 [141726]
    identical sequence to BP2131 and BB2413 from other Bordetella species
    1. Bordetella parapertussis [TaxId: 519] [141727] (2)
      SQ Q7WAM7 2-198
11. PrgU-like [159365] (1)
  Pfam 09627
  1. Uncharacterized protein PrgU [159366]
    1. Enterococcus faecalis [TaxId: 1351] [159367] (2)
      SQ Q8KUD5 12-113
      EF0006
12. SRA domain-like [159368] (2)
  Pfam 02182; recognizes the modified cytosine base (m5C) by flipping it out of DNA
  1. E3 ubiquitin-protein ligase UHRF1 [159369]
    1. Human (Homo sapiens) [TaxId: 9606] [159370] (7)
      SQ Q96T88 409-615! SQ Q96T88 414-617
    2. Mouse (Mus musculus) [TaxId: 10090] [159371] (7)
      SQ Q8VDF2 405-613! SQ Q8VDF2 418-625
13. YtmB-like [159372] (1)
  PfamB 020780
  1. Hypothetical protein YtmB [159373]
    1. Bacillus subtilis [TaxId: 1423] [159374] (8)
      SQ O34365 1-80