Class: Peptides

Peptides and fragments. Not a true class

Lineage:

1. Root: scop
2. Class: Peptides [58231]
   Peptides and fragments. Not a true class

Folds:

1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1)
2. Lantibiotic peptides [58243] (1)
   peptide antibiotic
3. Leucocin-like bacteriocin [100898] (1)
   consists of a conserved, disulfide-containing N-terminal region (forming a beta-sheet) and a C-terminal helix
4. Antimicrobial beta-hairpin [58251] (1)
   contains beta-hairpin crosslinked by disulfide bridge(s)
5. Antimicrobial helix [58268] (1)
   antibiotic peptide
6. Macrocyclic bacteriocins [58278] (1)
   macrocyclic antimicrobial peptide; bacteriocin
7. Peptide hormones [58283] (1)
   contains one alpha-helix
8. Angiotensin [90269] (1)
9. delta toxin-like [58307] (3)
   single alpha helix
10. PSP1-like [58312] (1)
11. Arg-rich RNA binding peptides [58321] (7)
12. DNA-binding domains of HMG-I(Y) [58348] (1)
13. VPR protein fragments [58353] (1)
14. Inactivation gate of potassium and sodium channels [58358] (1)
15. Coagulation factor VIII, membrane-binding peptide [58368] (1)
16. Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1)
17. Parathyroid hormone fragments (residues between 1 and 39) [58378] (1)
18. Corticotropin releasing hormone [58384] (1)
19. Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1)
20. Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1)
21. Insect toxins [58399] (1)
22. Tertiapin [58404] (1)
    small disulfide-rich peptide
23. Antifreeze polypeptide HPLC-6 [58409] (1)
24. Troponin I fragments [58414] (1)
25. Pilin fragments [58420] (1)
26. RP71935 [58427] (1)
27. Atrial natriuretic peptide [58432] (1)
28. Compstatin [58437] (1)
29. Membrane-bound antimicrobial peptides [58442] (1)
30. Endothelin-like [58449] (1)
    small disulfide-rich
31. Heat-stable enterotoxin (HSE) [58457] (1)
32. Conotoxins [58464] (1)
    disulfide-rich fold
33. Conantokin [58494] (1)
34. Contryphan-R [58502] (1)
35. Kappa-hefutoxin-like [58507] (2)
    hairpin of two short helices crosslinked with two disulfides
36. Penaeidin-3a [103726] (1)
37. Bradykinin [58512] (1)
38. Transmembrane helical fragments [58517] (1)
39. Topogenic peptides [58555] (4)
40. Phospholamban fragments [58568] (1)
41. Influenza hemagglutinin fragments [64631] (1)
42. Fragments of bowman-birk inhibitor [58574] (1)
43. Fragments of apolipoproteins [58579] (1)
44. Transactivation protein TAT [58593] (1)
45. Proline pipe [58599] (1)
46. Amyloid peptides [58604] (1)
47. Gelsolin fragment (residues 150-169) [58609] (1)
48. Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1)
49. Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1)
50. C-terminal fragment of thermolysin [63387] (1)
51. Capsid protein major homology region peptide analog [58629] (1)
52. CD4 and CD8 receptor regions [58635] (1)
53. Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103748] (1)
54. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1)
55. GroES fragments [58645] (1)
56. cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1)
57. HIV-1 Nef protein fragments [58657] (1)
58. HIV-1 envelope gp120 protein fragments [58662] (1)
59. HIV-1 gp41 fragments [70010] (1)
60. Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1)
61. P27(KIP1) fragment 22-106 [58672] (1)
62. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1)
63. Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90290] (1)
64. alpha-lactalbumin peptide model [58682] (1)
65. Coat protein-binding domain of bacteriophage P22 scaffolding protein [58687] (1)
66. Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1)
67. Integrin fragments [58697] (1)
68. Human glutathione reductase (HGR) inhibitor [58702] (1)
69. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1)
70. Histone H3 C-terminal fragment 130-135 [58712] (1)
71. Smad-binding domain of Sara [58717] (1)
72. Transactivation domain [81275] (1)
73. Nuclear receptor coactivator Src-1 [100901] (1)
74. TBP-binding domain of the transcription factor IIIb Brf1 subunit [90297] (1)
75. BRCA2 BRC4 repeat [82985] (1)
76. Peptide derived from p-21 activated kinase [58722] (1)
77. pak1 autoregulatory domain [58728] (1)
78. Translocated intimin receptor (tir) intimin-binding domain [58733] (1)
79. Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58738] (1)
80. Tumor suppressor p53 fragments [58743] (1)
81. FxFG nucleoporin repeats [58748] (1)
82. beta-Catenine bound non-globular protein regions [58753] (1)
83. Synaptobrevin-II fragments [58758] (1)
84. VMIP-II fragment [58763] (1)
85. Papillomavirus e6-interacting peptide of e6ap [58768] (1)
86. Isolated insulin B-chain [58773] (1)
87. N-terminal hairpin of ubiquitin (residues 1-17) [58778] (1)
88. alpha-helical hairpin of p8mtcp1 [58783] (1)
89. Syndecan-4 cytoplasmic domain [64638] (1)
90. Actin-binding peptides [70017] (1)
91. Pituitary adenylate cyclase activating polypeptide, pacap21 [64643] (1)
92. Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70022] (1)
93. Prepeptide of 5-ALAS [70027] (1)
94. Cholecystokinin receptor fragments [64648] (1)
95. the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70032] (1)
96. Trypsin inhibitor SFTIf-1 [64653] (1)
97. Prion protein fragments [70037] (1)
98. Tumor suppressor protein p19-ARF fragment [70042] (1)
99. Antennapedia homeodomain fragments [70047] (1)
100. Sheep myeloid antimicrobial peptide SMAP29 based peptides [75751] (1)
101. alpha-2a adrenergic receptor pepride t3-i2 [75756] (1)
102. Catestatin fragment from chromogranin A [75761] (1)
103. Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82992] (1)
104. N-terminal fragment of gastric H/K-ATPase [82997] (1)
105. Barstar fragment [83002] (1)
106. Cannabinoid receptor 1 (CB1) fragment [83007] (1)
107. Ribosomal protein L10 [64658] (1)
108. Ubiquitin interacting motif (UIM) [90302] (1)
109. Metal-binding peptide from MerP [103758] (1)
110. Marinostatin, MstI [103763] (1)
111. Cross-reactive peptides from 60S acidic ribosomal protein p2 [103768] (1)
112. NTR, cyclotide processing element [111516] (1)
113. HMG-box transcription factor 1 fragments [111523] (1)
114. MAD protein fragments [111528] (1)
115. Fragments of TNF receptors [111533] (1)
116. Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111538] (1)
117. Ribosomal protein L34p [144320] (1)
     non-globular, mainly alpha-helical
118. Ribosomal protein S21p [161307] (1)
     non-globular, mainly alpha-helical
119. Retinoblastoma-associated protein RB1 fragments [144325] (1)
120. Genome linked protein vpg [144330] (1)
121. Programmed cell death protein 5 fragments [144335] (1)

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk