Structural Classification of Proteins
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Superfamily: Retrovirus capsid dimerization domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Acyl carrier protein-like [47335]
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. Superfamily: Retrovirus capsid dimerization domain-like [47353]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Retrovirus capsid protein C-terminal domain [47354] (4)
    1. EIAV capsid protein p26 [47355]
      1. Equine infectious anemia virus [TaxId: 11665] [47356] (2) picpic
    2. HTLV-I capsid protein [47357]
      1. Human T-cell leukemia virus type 1 [TaxId: 11908] [47358] (1) picpic
    3. HIV capsid protein, dimerisation domain [47359]
      1. Human immunodeficiency virus type 1 [TaxId: 11676] [47360] (7) picpic
    4. RSV capsid protein [47361]
      1. Rous sarcoma virus [TaxId: 11886] [47362] (2) picpic
  2. SCAN domain [140466] (2)
    Pfam 02023; forms segment-swapped dimers compared to the retroviral capsid domain
    1. Zinc finger protein 42 [140467]
      1. Human (Homo sapiens) [TaxId: 9606] [140468] (2) picpic
        SQ P28698 37-128
    2. Zinc finger protein 174 [140469]
      1. Human (Homo sapiens) [TaxId: 9606] [140470] (2) picpic
        SQ Q15697 37-132
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk