Structural Classification of Proteins
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Superfamily: PGBD-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: PGBD-like [47089]
    core: 3 helices; bundle, closed, left-handed twist; parallel
  4. Superfamily: PGBD-like [47090]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Peptidoglycan binding domain, PGBD [47091] (2)
    1. Zn2+ DD-carboxypeptidase, N-terminal domain [47092]
      probable peptidoglycan-binding domain
      1. Streptomyces albus G [TaxId: 1962] [47093] (1) picpic
    2. Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain [140390]
      1. Escherichia coli [TaxId: 562] [140391] (2) picpic
        SQ P75820 195-275
  2. MMP N-terminal domain [63427] (4)
    1. Fibroblast collagenase (MMP-1) [116864]
      1. Human (Homo sapiens) [TaxId: 9606] [116865] (1) picpic
        SQ P03956 32-466
    2. Gelatinase A (MMP-2) [63428]
      1. Human (Homo sapiens) [TaxId: 9606] [63430] (3) picpic
    3. Stromelysin-1 (MMP-3) [63429]
      1. Human (Homo sapiens), fibroblast [TaxId: 9606] [63431] (1) picpic
    4. Gelatinase B (MMP-9) [74703]
      1. Human (Homo sapiens) [TaxId: 9606] [74704] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk