Structural Classification of Proteins
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Superfamily: Six-hairpin glycosidases

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: alpha/alpha toroid [48207]
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. Superfamily: Six-hairpin glycosidases [48208]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Glucoamylase [48209] (2)
    1. Glucoamylase [48210]
      1. Aspergillus awamori, variant x100 [TaxId: 105351] [48211] (6) picpic
      2. Yeast (Saccharomycopsis fibuligera) [TaxId: 4944] [48212] (3) picpic
  2. Cellulases catalytic domain [48213] (13)
    1. CelA cellulase [48214]
      1. Clostridium thermocellum [TaxId: 1515] [48215] (3) picpic
    2. Nonprocessive cellulase Cel9M [81846]
      contains only the catalytic module, which interacts with the substrate
      1. Clostridium cellulolyticum [TaxId: 1521] [81847] (2) picpic
    3. Endo-1,4-beta-xylanase [89105]
      cold-adapted family 8 xylanase
      1. Pseudoalteromonas haloplanktis [TaxId: 228] [89106] (8) picpic
    4. Endo/exocellulase:cellobiose E-4, N-terminal domain [48216]
      1. Thermomonospora fusca [TaxId: 2021] [48217] (4) picpic
      2. Clostridium cellulolyticum, atcc 35319 [TaxId: 1521] [89107] (4) picpic
        endoglucanase 9G
    5. Endo-b-1,4-glucanase [81848]
      1. Termite (Nasutitermes takasagoensis) [TaxId: 62960] [81849] (3) picpic
    6. CelD cellulase, C-terminal domain [48218]
      the other, N-terminal, domain is immunoglobulin-like
      1. Clostridium thermocellum [TaxId: 1515] [48219] (1) picpic
    7. Cellulose 1,4-beta-cellobiosidase CbhA [101363]
      1. Clostridium thermocellum [TaxId: 1515] [101364] (2) picpic
    8. Processive endocellulase CelF (Cel48F) [48220]
      1. Clostridium cellulolyticum [TaxId: 1521] [48221] (9) picpic
      2. Clostridium thermocellum [TaxId: 1515] [74765] (2) picpic
    9. Chitosanase [116987]
      1. Bacillus sp., strain k17 [TaxId: 1409] [116988] (2) picpic
        SQ Q9ALZ1 49-434
    10. Xylanase Y [140784]
      1. Bacillus halodurans [TaxId: 86665] [140785] (3) picpic
        SQ Q9KB30 6-381
    11. Probable endoglucanase CmcAX [140786]
      1. Acetobacter xylinus [TaxId: 28448] [140787] (1) picpic
        SQ P37696 23-341
  3. N-acylglucosamine (NAG) epimerase [48222] (2)
    1. N-acyl-D-glucosamine 2-epimerase [48223]
      1. Pig (Sus scrofa) [TaxId: 9823] [48224] (1) picpic
    2. Putative NAG isomerase YihS [140788]
      1. Salmonella typhimurium [TaxId: 90371] [140789] (6) picpic
        SQ Q8ZKT7 2-413
  4. Glycosyltransferase family 36 C-terminal domain [63588] (2)
    overall domain organization is similar to Bacterial glucoamylase
    1. Lactobacillus maltose phosphorylase, central domain [63589]
      includes alpha-helical linker to the N-terminal domain and a small C-terminal beta-sandwich subdomain
      1. Lactobacillus brevis [TaxId: 1580] [63590] (1) picpic
    2. Chitobiose phosphorylase ChbP [109951]
      1. Vibrio proteolyticus [TaxId: 671] [109952] (3) picpic
        SQ Q76IQ9
  5. Bacterial glucoamylase C-terminal domain-like [81850] (2)
    overall domain organization is similar to Lactobacillus maltose phosphorylase
    1. Bacterial glucoamylase, C-terminal domain [81851]
      1. Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517] [81852] (2) picpic
    2. Glucodextranase, domain A [101365]
      1. Arthrobacter globiformis [TaxId: 1665] [101366] (2) picpic
  6. Hypothetical protein YteR [89108] (1)
    unknown function; weak sequence similarity to the catalytic domain of cellulases
    1. Hypothetical protein YteR [89109]
      1. Bacillus subtilis [TaxId: 1423] [89110] (2) picpic
  7. Glycosyl Hydrolase Family 88 [109953] (1)
    Pfam 07470
    1. Unsaturated glucuronyl hydrolase [109954]
      1. Bacillus sp. GL1 [TaxId: 84635] [109955] (4) picpic
        SQ Q9RC92
  8. CPF0428-like [158737] (2)
    Pfam 06824; DUF1237
    1. Hypothetical protein BT3781 [158738]
      1. Bacteroides thetaiotaomicron [TaxId: 818] [158739] (2) picpic
        SQ Q8A185 39-481
    2. Hypothetical protein CPF0428 [158740]
      1. Clostridium perfringens [TaxId: 1502] [158741] (1) picpic
        SQ Q0TU05 2-427
  9. Trehalase-like [158742] (1)
    Pham 01204
    1. Periplasmic trehalase TreA [158743]
      1. Escherichia coli [TaxId: 562] [158744] (2) picpic
        SQ P13482 37-547

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site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk