Structural Classification of Proteins
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Family: UBA domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RuvA C-terminal domain-like [46928]
    3 helices; bundle, right-handed twist
  4. Superfamily: UBA-like [46934]
    link to SUPERFAMILY database - Superfamily
  5. Family: UBA domain [46935]

Protein Domains:

  1. DNA repair protein Hhr23a [46936]
    1. Human (Homo sapiens) [TaxId: 9606] [46937] (5)
      1. 1oqy picpicxrefxref
        flexible linkers excluded
        1. region a:160-200 [93439] picpiclink
        2. region a:317-360 [93440] picpiclink
      2. 1qze picpicxrefxref
        1. region a:160-200 [96629] picpiclink
        2. region a:317-360 [96630] picpiclink
      3. 1ify picpic
        internal UBA domain
        1. chain a [71207] picpiclink
      4. 1f4i picpic
        C-terminal UBA domain
        mutant
        1. chain a [16288] picpiclink
      5. 1dv0 picpic
        C-terminal UBA domain
        1. chain a [16289] picpiclink
  2. Sequestosome 1 (Sqstm1) [101063]
    ubiquitin-binding protein p62
    1. Human (Homo sapiens) [TaxId: 9606] [101064] (4)
      1. 2k0b picpic
        automatically matched to d1q02a_
        1. region x:1-52 [148253] picpiclink
      2. 2jy7 picpic
        automatically matched to d1q02a_
        1. region a:1-52 [148239] picpiclink
      3. 1q02 picpic
        1. chain a [95490] picpiclink
      4. 2jy8 picpic
        automatically matched to d1q02a_
        1. region a:1-52 [148240] picpiclink
  3. Auxilin-like protein Swa2p [101065]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101066] (1)
      1. 1pgy picpic
        1. chain a [94696] picpiclink
  4. Ubiquitin-protein ligase ubc1 [109719]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109720] (1)
      SQ P21734
      1. 1tte picpicxref
        mutant
        1. region a:161-215 [107295] picpiclink
  5. Ubiquitin carboxyl-terminal hydrolase 25 [109721]
    1. Mouse (Mus musculus) [TaxId: 10090] [109722] (1)
      SQ P57080 1-67
      1. 1vdl picpic
        Structural genomics target
        1. chain a [108528] picpiclink
  6. NEDD8 ultimate buster-1 (Nub1) [116824]
    1. Mouse (Mus musculus) [TaxId: 10090] [116825] (1)
      SQ P54729 469-540
      1. 1veg picpic
        Structural genomics target
        1. chain a [113634] picpiclink
  7. Ubiquitin isopeptidase T [116826]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116827] (2)
      SQ Q9LJT6 594-665; Q8L6Y1 651-710
      1. 1vek picpic
        Structural genomics target
        1. chain a [113636] picpiclink
      2. 1wiv picpic
        Structural genomics target
        1. chain a [114680] picpiclink
  8. Rhomboid family protein At3g58460 [116828]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116829] (1)
      SQ Q8LB17 342-401
      1. 1vg5 picpic
        1. chain a [113640] picpiclink
  9. Ubiquitin-associated protein 1, UBAP1 [116830]
    1. Human (Homo sapiens) [TaxId: 9606] [116831] (1)
      SQ Q9NZ09 381-430
      1. 1wgn picpic
        Structural genomics target
        1. chain a [114617] picpiclink
  10. UBA/UBX 33.3 kDa protein [116832]
    1. Mouse (Mus musculus) [TaxId: 10090] [116833] (1)
      SQ Q922Y1 2-52
      1. 1whc picpic
        Structural genomics target
        1. chain a [114640] picpiclink
  11. Tudor domain containing protein 3, TDRD3 [116834]
    1. Human (Homo sapiens) [TaxId: 9606] [116835] (1)
      SQ Q9H7E2 194-243
      1. 1wji picpic
        Structural genomics target
        1. chain a [114698] picpiclink
  12. DSK2 [140323]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140324] (28)
      SQ P48510 328-371! SQ P48510 328-373
      1. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region a:328-371 [129329] picpiclink
      2. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region b:328-370 [129330] picpiclink
      3. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region c:328-371 [129331] picpiclink
      4. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region d:328-371 [129332] picpiclink
      5. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region e:328-370 [129333] picpiclink
      6. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region f:328-370 [129334] picpiclink
      7. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region g:328-371 [129335] picpiclink
      8. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region h:328-370 [129336] picpiclink
      9. 2bwb picpic
        automatically matched to 2BWE A:328-371
        1. region i:328-370 [129337] picpiclink
      10. 2bwe picpicxrefxrefxref
        1. region a:328-371 [129342] picpiclink
      11. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region b:328-371 [129343] picpiclink
      12. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region c:328-371 [129344] picpiclink
      13. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region d:328-371 [129345] picpiclink
      14. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region e:328-371 [129346] picpiclink
      15. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region f:328-371 [129347] picpiclink
      16. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region g:328-371 [129348] picpiclink
      17. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region h:328-371 [129349] picpiclink
      18. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region i:328-371 [129350] picpiclink
      19. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region j:328-371 [129351] picpiclink
      20. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region k:328-371 [129352] picpiclink
      21. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region l:328-371 [129353] picpiclink
      22. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region m:328-371 [129354] picpiclink
      23. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region n:328-371 [129355] picpiclink
      24. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region o:328-371 [129356] picpiclink
      25. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region p:328-370 [129357] picpiclink
      26. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region q:328-371 [129358] picpiclink
      27. 2bwe picpicxrefxrefxref
        automatically matched to 2BWE A:328-371
        1. region r:328-371 [129359] picpiclink
      28. 1wr1 picpicxref
        1. region b:328-373 [121185] picpiclink
  13. Ubiquilin-3 [140325]
    1. Human (Homo sapiens) [TaxId: 9606] [140326] (1)
      SQ Q9H347 615-655
      1. 2dah picpic
        1. region a:8-48 [131352] picpiclink
  14. Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain [140327]
    1. Human (Homo sapiens) [TaxId: 9606] [140328] (5)
      SQ P61086 157-198
      1. 3e46 picpicxref
        automatically matched to d1ylaa1
        complexed with ca; mutant
        1. region a:157-198 [157994] picpiclink
      2. 1yla picpicxrefxref
        1. region a:157-198 [123641] picpiclink
      3. 1yla picpicxrefxref
        automatically matched to 1YLA A:157-198
        1. region b:157-198 [123643] picpiclink
      4. 2o25 picpicxrefxrefxrefxref
        automatically matched to 1YLA A:157-198
        1. region a:157-198 [138886] picpiclink
      5. 2o25 picpicxrefxrefxrefxref
        automatically matched to 1YLA A:157-198
        1. region b:157-198 [138888] picpiclink
  15. Cbl-interacting protein p70, STS1 [140329]
    1. Human (Homo sapiens) [TaxId: 9606] [140330] (1)
      SQ Q8TF42 26-76
      1. 2cpw picpic
        1. region a:8-58 [130707] picpiclink
  16. Ubiquitin-associated protein 2-like Ubap2l [140331]
    RSGI ruh-015
    1. Mouse (Mus musculus) [TaxId: 10090] [140332] (1)
      SQ Q80X50 19-109
      1. 1wj7 picpic
        1. region a:8-98 [120976] picpiclink
  17. Trinucleotide repeat containing 6c protein, TNRC6C [140333]
    1. Human (Homo sapiens) [TaxId: 9606] [140334] (1)
      SQ Q86UE5 197-268
      1. 2dkl picpic
        1. region a:8-79 [131555] picpiclink
  18. Suppressor of T-cell receptor signaling 2 (STS-2) [140335]
    1. Human (Homo sapiens) [TaxId: 9606] [140336] (1)
      SQ P57075 20-70
      1. 2crn picpic
        1. region a:8-58 [130741] picpiclink
  19. Migration-inducing protein 19 NBR1 [140337]
    Next to Brca1 gene 1
    1. Human (Homo sapiens) [TaxId: 9606] [140338] (1)
      SQ Q14596 916-956
      1. 2cp8 picpic
        1. region a:8-48 [130695] picpiclink
  20. Ubiquilin-like protein Ubqlnl [140339]
    1. Mouse (Mus musculus) [TaxId: 10090] [140340] (1)
      SQ Q14DL0 561-610
      1. 2dna picpic
        1. region a:12-61 [131586] picpiclink
  21. Serine/threonine protein kinase LATS2 [140341]
    1. Mouse (Mus musculus) [TaxId: 10090] [140342] (1)
      SQ Q7TSJ6 98-138
      1. 2cos picpic
        1. region a:8-48 [130683] picpiclink
  22. 4931431F19Rik [140343]
    Riken cDNA clone 4931431f19
    1. Mouse (Mus musculus) [TaxId: 10090] [140344] (1)
      SQ Q9D4I8 447-507
      1. 1vej picpic
        1. region a:8-68 [120020] picpiclink
  23. UBA-domain protein mud1 [158356]
    1. Schizosaccharomyces pombe [TaxId: 4896] [158357] (2)
      SQ Q10256 295-332
      1. 1z96 picpic
        1. region a:295-332 [145960] picpiclink
      2. 1z96 picpic
        automatically matched to 1Z96 A:295-332
        1. region b:298-332 [145961] picpiclink
  24. Endocytic protein Ede1, YBL047C [158358]
    1. Saccharomyces cerevisiae [TaxId: 4932] [158359] (1)
      SQ P34216 1339-1381
      1. 2g3q picpicxref
        1. region a:1339-1381 [145181] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk