Structural Classification of Proteins
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Superfamily: UBA-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RuvA C-terminal domain-like [46928]
    3 helices; bundle, right-handed twist
  4. Superfamily: UBA-like [46934]
    link to SUPERFAMILY database - Superfamily

Families:

  1. UBA domain [46935] (24)
    1. DNA repair protein Hhr23a [46936]
      1. Human (Homo sapiens) [TaxId: 9606] [46937] (5) picpic
    2. Sequestosome 1 (Sqstm1) [101063]
      ubiquitin-binding protein p62
      1. Human (Homo sapiens) [TaxId: 9606] [101064] (4) picpic
    3. Auxilin-like protein Swa2p [101065]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101066] (1) picpic
    4. Ubiquitin-protein ligase ubc1 [109719]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109720] (1) picpic
        SQ P21734
    5. Ubiquitin carboxyl-terminal hydrolase 25 [109721]
      1. Mouse (Mus musculus) [TaxId: 10090] [109722] (1) picpic
        SQ P57080 1-67
    6. NEDD8 ultimate buster-1 (Nub1) [116824]
      1. Mouse (Mus musculus) [TaxId: 10090] [116825] (1) picpic
        SQ P54729 469-540
    7. Ubiquitin isopeptidase T [116826]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116827] (2) picpic
        SQ Q9LJT6 594-665; Q8L6Y1 651-710
    8. Rhomboid family protein At3g58460 [116828]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116829] (1) picpic
        SQ Q8LB17 342-401
    9. Ubiquitin-associated protein 1, UBAP1 [116830]
      1. Human (Homo sapiens) [TaxId: 9606] [116831] (1) picpic
        SQ Q9NZ09 381-430
    10. UBA/UBX 33.3 kDa protein [116832]
      1. Mouse (Mus musculus) [TaxId: 10090] [116833] (1) picpic
        SQ Q922Y1 2-52
    11. Tudor domain containing protein 3, TDRD3 [116834]
      1. Human (Homo sapiens) [TaxId: 9606] [116835] (1) picpic
        SQ Q9H7E2 194-243
    12. DSK2 [140323]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140324] (28) picpic
        SQ P48510 328-371! SQ P48510 328-373
    13. Ubiquilin-3 [140325]
      1. Human (Homo sapiens) [TaxId: 9606] [140326] (1) picpic
        SQ Q9H347 615-655
    14. Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain [140327]
      1. Human (Homo sapiens) [TaxId: 9606] [140328] (5) picpic
        SQ P61086 157-198
    15. Cbl-interacting protein p70, STS1 [140329]
      1. Human (Homo sapiens) [TaxId: 9606] [140330] (1) picpic
        SQ Q8TF42 26-76
    16. Ubiquitin-associated protein 2-like Ubap2l [140331]
      RSGI ruh-015
      1. Mouse (Mus musculus) [TaxId: 10090] [140332] (1) picpic
        SQ Q80X50 19-109
    17. Trinucleotide repeat containing 6c protein, TNRC6C [140333]
      1. Human (Homo sapiens) [TaxId: 9606] [140334] (1) picpic
        SQ Q86UE5 197-268
    18. Suppressor of T-cell receptor signaling 2 (STS-2) [140335]
      1. Human (Homo sapiens) [TaxId: 9606] [140336] (1) picpic
        SQ P57075 20-70
    19. Migration-inducing protein 19 NBR1 [140337]
      Next to Brca1 gene 1
      1. Human (Homo sapiens) [TaxId: 9606] [140338] (1) picpic
        SQ Q14596 916-956
    20. Ubiquilin-like protein Ubqlnl [140339]
      1. Mouse (Mus musculus) [TaxId: 10090] [140340] (1) picpic
        SQ Q14DL0 561-610
    21. Serine/threonine protein kinase LATS2 [140341]
      1. Mouse (Mus musculus) [TaxId: 10090] [140342] (1) picpic
        SQ Q7TSJ6 98-138
    22. 4931431F19Rik [140343]
      Riken cDNA clone 4931431f19
      1. Mouse (Mus musculus) [TaxId: 10090] [140344] (1) picpic
        SQ Q9D4I8 447-507
    23. UBA-domain protein mud1 [158356]
      1. Schizosaccharomyces pombe [TaxId: 4896] [158357] (2) picpic
        SQ Q10256 295-332
    24. Endocytic protein Ede1, YBL047C [158358]
      1. Saccharomyces cerevisiae [TaxId: 4932] [158359] (1) picpic
        SQ P34216 1339-1381
  2. TS-N domain [63423] (4)
    1. Elongation factor Ts (EF-Ts), N-terminal domain [63424]
      1. Escherichia coli [TaxId: 562] [63425] (1) picpic
      2. Thermus thermophilus [TaxId: 274] [63426] (1) picpic
      3. Cow (Bos taurus), mitochondrial [TaxId: 9913] [116836] (1) picpic
        SQ P43896 56-331
      4. Human (Homo sapiens), mitochondrial [TaxId: 9606] [140345] (1) picpic
        SQ P43897 45-95
  3. TAP-C domain-like [68973] (2)
    1. FG-binding, C-terminal domain of TAP [68974]
      1. Human (Homo sapiens) [TaxId: 9606] [68975] (2) picpic
    2. NSFL1 (p97 ATPase) cofactor p47, UBA-like domain [101067]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [101068] (1) picpic
  4. CUE domain [88995] (4)
    Pfam 02845
    1. Vacuolar protein sorting-associated protein vps9 [88996]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88997] (2) picpic
    2. Protein Cue2 (hypothetical protein YKL090W) [88998]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88999] (1) picpic
    3. Toll-interacting protein [116837]
      1. Human (Homo sapiens) [TaxId: 9606] [116838] (1) picpic
        SQ Q9H0E2 229-274
    4. Activating signal cointegrator 1 complex subunit 2 [140346]
      1. Human (Homo sapiens) [TaxId: 9606] [140347] (1) picpic
        SQ Q9H1I8 463-525
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk