Structural Classification of Proteins
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Family: PHD domain

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: FYVE/PHD zinc finger [57902]
    dimetal(zinc)-bound alpha+beta fold
  4. Superfamily: FYVE/PHD zinc finger [57903]
    link to SUPERFAMILY database - Superfamily
  5. Family: PHD domain [57911]

Protein Domains:

  1. Williams-Beuren syndrome transcription factor, WSTF [57912]
    1. Human (Homo sapiens) [TaxId: 9606] [57913] (1)
      1. 1f62 picpic
        complexed with zn
        1. chain a [45360] picpiclink
  2. Nuclear corepressor KAP-1 (TIF-1beta) [57914]
    1. Human (Homo sapiens) [TaxId: 9606] [57915] (1)
      1. 1fp0 picpic
        complexed with zn
        1. region a:19-88 [45361] picpiclink
  3. Mi2-beta (CHD4) [90226]
    chromodomain-helicase-DNA-binding protein 4
    1. Human (Homo sapiens) [TaxId: 9606] [90227] (2)
      1. 1mm3 picpic
        second PHD domain with the C-terminal loop replaced by the corresponding loop from WSTF
        complexed with zn
        1. chain a [85016] picpiclink
      2. 1mm2 picpic
        second PHD domain
        complexed with zn
        1. chain a [85015] picpiclink
  4. PHD finger protein At5g26210 [118328]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118329] (1)
      SQ O81488 201-251
      1. 1we9 picpic
        Structural genomics target
        complexed with zn
        1. chain a [114549] picpiclink
  5. PHD finger protein At1g33420 [118330]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118331] (1)
      SQ Q9C810 595-653
      1. 1wee picpic
        Structural genomics target
        complexed with zn
        1. chain a [114550] picpiclink
  6. Death associated transcription factor 1, Datf1 (DIO-1) [118332]
    1. Mouse (Mus musculus) [TaxId: 10090] [118333] (1)
      SQ Q8C9B9 257-319
      1. 1wem picpic
        Structural genomics target
        complexed with zn
        1. chain a [114559] picpiclink
  7. Inhibitor of growth protein 4, Ing4 [118334]
    1. Mouse (Mus musculus) [TaxId: 10090] [118335] (2)
      SQ Q8C0D7 188-245
      1. 1wen picpic
        Structural genomics target
        complexed with zn
        1. chain a [114560] picpiclink
      2. 1weu picpic
        Structural genomics target; the extra N-terminal region (168-187) is unstructured
        complexed with zn
        1. chain a [114565] picpiclink
    2. Homo sapiens [TaxId: 9606] [161223] (5)
      1. 2pnx picpic
        automatically matched to d1wena_
        complexed with m3l, zn
        1. region a:195-245 [149708] picpiclink
      2. 2vnf picpic
        automatically matched to d1wena_
        complexed with dtt, dtu, m3l, na, zn
        1. region a:195-244 [153333] picpiclink
      3. 2vnf picpic
        automatically matched to d1wena_
        complexed with dtt, dtu, m3l, na, zn
        1. region c:191-244 [153334] picpiclink
      4. 2pnx picpic
        automatically matched to d1wena_
        complexed with m3l, zn
        1. region c:195-244 [149709] picpiclink
      5. 2k1j picpic
        automatically matched to d1wena_
        complexed with zn
        1. region a:188-245 [148257] picpiclink
  8. PHD finger protein 8 [118336]
    1. Mouse (Mus musculus) [TaxId: 10090] [118337] (1)
      SQ Q80TJ7 1-66
      1. 1wep picpic
        Structural genomics target
        complexed with zn
        1. chain a [114562] picpiclink
  9. PHD finger protein 7 (NYD-SP6) [118338]
    1. Mouse (Mus musculus) [TaxId: 10090] [118339] (1)
      SQ Q9DAG9 232-304
      1. 1weq picpic
        Structural genomics target
        complexed with zn
        1. chain a [114563] picpiclink
  10. PHD Inhibitor of growth protein 2, Ing2 [118340]
    1. Mouse (Mus musculus) [TaxId: 10090] [118341] (1)
      SQ Q9ESK4 205-262
      1. 1wes picpic
        Structural genomics target
        complexed with zn
        1. chain a [114564] picpiclink
  11. PHD finger protein 22 [118342]
    1. Mouse (Mus musculus) [TaxId: 10090] [118343] (1)
      SQ Q9D168 150-224
      1. 1wev picpic
        Structural genomics target
        complexed with zn
        1. chain a [114566] picpiclink
  12. Sumoylation ligase E3, SIZ1 [118344]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118345] (1)
      SQ Q680Q4 104-168
      1. 1wew picpic
        Structural genomics target
        complexed with zn
        1. chain a [114567] picpiclink
  13. V(D)J recombination-activating protein 2, Rag2 [161224]
    1. Mouse (Mus musculus) [TaxId: 10090] [161225] (14)
      SQ P21784 414-487
      1. 2v89 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, zn
        1. region a:1414-1487 [152778] picpiclink
      2. 2v89 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, zn
        1. region b:414-487 [152779] picpiclink
      3. 2v86 picpic
        automatically matched to 2JWO A:414-487
        complexed with da2, m3l, zn
        1. region a:414-487 [152772] picpiclink
      4. 2v86 picpic
        automatically matched to 2JWO A:414-487
        complexed with da2, m3l, zn
        1. region b:414-487 [152773] picpiclink
      5. 2v87 picpic
        automatically matched to 2JWO A:414-487
        complexed with 2mr, m3l, zn
        1. region a:414-487 [152774] picpiclink
      6. 2v87 picpic
        automatically matched to 2JWO A:414-487
        complexed with 2mr, m3l, zn
        1. region b:414-487 [152775] picpiclink
      7. 2v85 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, nmm, zn
        1. region a:414-487 [152770] picpiclink
      8. 2v85 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, nmm, zn
        1. region b:414-487 [152771] picpiclink
      9. 2v88 picpic
        automatically matched to 2JWO A:414-487
        complexed with 2mr, mly, zn
        1. region a:414-487 [152776] picpiclink
      10. 2v88 picpic
        automatically matched to 2JWO A:414-487
        complexed with 2mr, mly, zn
        1. region b:414-487 [152777] picpiclink
      11. 2v83 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, zn
        1. region a:414-485 [152767] picpiclink
      12. 2v83 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, zn
        1. region b:414-487 [152768] picpiclink
      13. 2v83 picpic
        automatically matched to 2JWO A:414-487
        complexed with m3l, zn
        1. region c:414-483 [152769] picpiclink
      14. 2jwo picpic
        complexed with zn
        1. region a:414-487 [148229] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk