Structural Classification of Proteins
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Family: Dac-like

Pfam 02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (scop_fa 69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: beta-lactamase/transpeptidase-like [56600]
    contains a cluster of helices and an alpha+beta sandwich
  4. Superfamily: beta-lactamase/transpeptidase-like [56601]
    link to SUPERFAMILY database - Superfamily
  5. Family: Dac-like [144040]
    Pfam 02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (scop_fa 69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

Protein Domains:

  1. Penicillin-binding protein DacC [144041]
    1. Bacillus subtilis [TaxId: 1423] [144042] (3)
      SQ P39844 34-491
      1. 1w5d picpic
        complexed with ca
        1. region a:5-462 [120642] picpiclink
      2. 2j9p picpic
        automatically matched to d1w5da1
        complexed with rez
        1. region a:5-462 [147944] picpiclink
      3. 2j9p picpic
        automatically matched to d1w5da1
        complexed with rez
        1. region b:5-462 [147945] picpiclink
  2. D-alanyl-D-alanine carboxypeptidase Dac [144043]
    1. Actinomadura sp. [TaxId: 1989] [144044] (12)
      SQ P39045 50-516
      1. 1w79 picpic
        complexed with mg, so4
        1. region a:1-467 [120680] picpiclink
      2. 1w79 picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, so4
        1. region b:1-466 [120681] picpiclink
      3. 1w79 picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, so4
        1. region c:1-466 [120682] picpiclink
      4. 1w79 picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, so4
        1. region d:1-467 [120683] picpiclink
      5. 1w8y picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, ncf, so4
        1. region a:1-467 [120754] picpiclink
      6. 1w8y picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, ncf, so4
        1. region b:1-466 [120755] picpiclink
      7. 1w8y picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, ncf, so4
        1. region c:1-466 [120756] picpiclink
      8. 1w8y picpic
        automatically matched to 1W79 A:1-467
        complexed with mg, ncf, so4
        1. region d:1-467 [120757] picpiclink
      9. 1w8q picpic
        automatically matched to 1W79 A:1-467
        complexed with co, so4
        1. region a:1-467 [120730] picpiclink
      10. 1w8q picpic
        automatically matched to 1W79 A:1-467
        complexed with co, so4
        1. region b:1-466 [120731] picpiclink
      11. 1w8q picpic
        automatically matched to 1W79 A:1-467
        complexed with co, so4
        1. region c:1-466 [120732] picpiclink
      12. 1w8q picpic
        automatically matched to 1W79 A:1-467
        complexed with co, so4
        1. region d:1-467 [120733] picpiclink
  3. DD-carboxypeptidase DacB [144045]
    Penicillin-binding protein 4
    1. Escherichia coli [TaxId: 562] [144046] (6)
      SQ P24228 22-477
      1. 2ex2 picpic
        complexed with gol
        1. region a:22-477 [132497] picpiclink
      2. 2ex8 picpic
        automatically matched to 2EX2 A:22-477
        complexed with pnm
        1. region a:22-477 [132519] picpiclink
      3. 2ex6 picpic
        automatically matched to 2EX2 A:22-477
        complexed with aic, gol
        1. region a:28-477 [132518] picpiclink
      4. 2ex9 picpic
        automatically matched to 2EX2 A:22-477
        complexed with gol, pnv
        1. region a:28-477 [132520] picpiclink
      5. 2exa picpic
        automatically matched to 2EX2 A:22-477
        complexed with fro, gol
        1. region a:26-477 [132521] picpiclink
      6. 2exb picpic
        automatically matched to 2EX2 A:22-477
        complexed with fxm, gol
        1. region a:24-477 [132522] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk