Structural Classification of Proteins
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Family: RraA-like

aka MenG-like; characterized as regulator of RNase E activity A (RraA) that globally modulates RNA abundance in E. coli

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: The "swivelling" beta/beta/alpha domain [52008]
    3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology
    this domain is thought to be mobile in most multi-domain proteins known to contain it
  4. Superfamily: RraA-like [89562]
    structural similarity and possible distant homology to the phosphohistidine domain of pyruvate phosphate dikinase
    link to SUPERFAMILY database - Superfamily
  5. Family: RraA-like [89563]
    aka MenG-like; characterized as regulator of RNase E activity A (RraA) that globally modulates RNA abundance in E. coli

Protein Domains:

  1. Hypothetical protein Rv3853 [89564]
    RraA homologue; (mis)annotated as a probable MenG-like demethylmenaquinone methyltransferase
    1. Mycobacterium tuberculosis [TaxId: 1773] [89565] (1)
      1. 1nxj picpic
        structural genomics
        complexed with glv, tla
        1. chain a [86382] picpiclink
        2. chain b [86383] picpiclink
        3. chain c [86384] picpiclink
  2. Regulator of RNase E activity RraA (MenG) [102192]
    1. Escherichia coli [TaxId: 562] [102193] (1)
      1. 1q5x picpic
        1. chain a [95947] picpiclink
        2. chain b [95948] picpiclink
        3. chain c [95949] picpiclink
  3. Hypothetical protein VC2366 [102194]
    RraA homologue
    1. Vibrio cholerae [TaxId: 666] [102195] (1)
      1. 1vi4 picpic
        structural genomics
        1. chain a [100731] picpiclink
  4. Demethylmenaquinone methyltransferase [102196]
    as (mis)annotated in the PDB entry; RraA homologue
    1. Thermus thermophilus [TaxId: 274] [102197] (1)
      1. 1j3l picpic
        complexed with cl, mg; mutant
        1. chain a [90813] picpiclink
        2. chain b [90814] picpiclink
        3. chain c [90815] picpiclink
        4. chain d [90816] picpiclink
        5. chain e [90817] picpiclink
        6. chain f [90818] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk