Structural Classification of Proteins
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Fold: Tubulin nucleotide-binding domain-like

3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Tubulin nucleotide-binding domain-like [52489]
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

Superfamilies:

  1. Tubulin nucleotide-binding domain-like [52490] (1)
    link to SUPERFAMILY database - Superfamily
    1. Tubulin, GTPase domain [52491] (9)
      1. Cell-division protein FtsZ [52492]
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [52493] (7)
          SQ Q57816 23-360
          1. 2vap picpicxref
            automatically matched to d1fsza1
            complexed with gdp
            1. region a:23-231 [152828] picpiclink
          2. 1w5b picpicxref
            complexed with gtp
            1. region a:23-231 [114211] picpiclink
            2. region b:23-231 [114213] picpiclink
          3. 1w5a picpicxref
            complexed with gtp, mg
            1. region a:23-231 [114207] picpiclink
            2. region b:23-231 [114209] picpiclink
          4. 1w58 picpicxref
            complexed with g2p, mg
            1. region 1:23-231 [114201] picpiclink
          5. 1w59 picpicxref
            complexed with so4
            1. region a:23-231 [114203] picpiclink
            2. region b:23-231 [114205] picpiclink
          6. 1fsz picpicxref
            complexed with gdp
            1. region a:23-231 [31750] picpiclink
          7. 1w5e picpicxref
            complexed with gtp; mutant
            1. region a:23-231 [114229] picpiclink
            2. region b:23-231 [114231] picpiclink
            3. region c:23-231 [114233] picpiclink
            4. region d:23-231 [114235] picpiclink
            5. region e:23-231 [114237] picpiclink
            6. region f:23-231 [114239] picpiclink
            7. region g:23-231 [114241] picpiclink
            8. region h:23-231 [114243] picpiclink
            9. region i:23-231 [114245] picpiclink
        2. Pseudomonas aeruginosa [TaxId: 287] [89639] (2)
          1. 1ofu picpicxrefxref
            complexed with SulA homologue PA3008
            complexed with gdp
            1. region a:11-208 [86972] picpiclink
            2. region b:11-208 [86974] picpiclink
          2. 2vaw picpicxref
            automatically matched to d1ofua1
            complexed with gdp
            1. region a:11-208 [152856] picpiclink
        3. Mycobacterium tuberculosis [TaxId: 1773] [110501] (7)
          SQ O08378
          1. 1rq2 picpicxref
            complexed with cit
            1. region a:8-205 [105048] picpiclink
            2. region b:8-205 [105050] picpiclink
          2. 1rlu picpicxref
            complexed with gol, gsp
            1. region a:8-205 [104984] picpiclink
            2. region b:8-205 [104986] picpiclink
          3. 2q1y picpicxrefxref
            automatically matched to d1rlua1
            complexed with gsp
            1. region a:8-205 [150004] picpiclink
          4. 2q1y picpicxrefxref
            automatically matched to d1rlua1
            complexed with gsp
            1. region b:8-205 [150006] picpiclink
          5. 2q1x picpicxrefxref
            automatically matched to d1rlua1
            complexed with cit
            1. region a:8-205 [150000] picpiclink
          6. 2q1x picpicxrefxref
            automatically matched to d1rlua1
            complexed with cit
            1. region b:8-205 [150002] picpiclink
          7. 1rq7 picpicxref
            complexed with gdp
            1. region a:8-205 [105052] picpiclink
            2. region b:8-205 [105054] picpiclink
        4. Thermotoga maritima [TaxId: 2336] [117498] (1)
          SQ O08398 22-335
          1. 1w5f picpicxref
            complexed with g2p, mg; mutant
            1. region a:22-215 [114247] picpiclink
            2. region b:22-215 [114249] picpiclink
      2. Tubulin alpha-subunit [52494]
        1. Pig (Sus scrofa) [TaxId: 9823] [52495] (3)
          1. 1tub picpicxrefxrefxref
            complexed with gdp, gtp, txl
            1. region a:1-245 [31751] picpiclink
          2. 2hxf picpicxrefxrefxrefxref
            automatically matched to d1tuba1
            complexed with anp, gdp, gtp, mg, ta1; mutant
            1. region a:2-245 [136838] picpiclink
          3. 2hxh picpicxrefxrefxref
            automatically matched to d1tuba1
            complexed with adp, gdp, gtp, mg, ta1; mutant
            1. region a:2-245 [136849] picpiclink
        2. Cow (Bos taurus) [TaxId: 9913] [63989] (5)
          1. 1jff picpicxrefxrefxref
            complexed with gdp, gtp, mg, ta1, zn
            1. region a:2-245 [62932] picpiclink
          2. 1sa0 picpicxrefxrefxrefxref
            complexed with cn2, gdp, gtp, mg
            1. region a:2-245 [98769] picpiclink
            2. region c:2-245 [98773] picpiclink
          3. 1z2b picpicxrefxrefxrefxrefxrefxrefxref
            complexed with cn2, gdp, gtp, mg, vlb
            1. region a:2-245 [144725] picpiclink
          4. 1z2b picpicxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1Z2B A:2-245
            complexed with cn2, gdp, gtp, mg, vlb
            1. region c:2-245 [144729] picpiclink
          5. 1sa1 picpicxrefxrefxrefxref
            complexed with gdp, gtp, mg, pod
            1. region a:2-245 [98778] picpiclink
            2. region c:2-245 [98782] picpiclink
        3. Prosthecobacter dejongeii [TaxId: 48465] [159531] (3)
          SQ Q8GCC5 3-246
          bacterial tubulin BtubA
          1. 2bto picpicxrefxrefxref
            complexed with gtp
            1. region a:3-246 [145009] picpiclink
          2. 2bto picpicxrefxrefxref
            automatically matched to 2BTO A:3-246
            complexed with gtp
            1. region b:3-246 [145011] picpiclink
          3. 2btq picpicxref
            automatically matched to 2BTO A:3-246
            complexed with gdp, so4
            1. region a:3-246 [146216] picpiclink
      3. Tubulin beta-subunit [52496]
        1. Pig (Sus scrofa) [TaxId: 9823] [52497] (1)
          1. 1tub picpicxrefxrefxref
            complexed with gdp, gtp, txl
            1. region b:1-245 [31752] picpiclink
        2. Cow (Bos taurus) [TaxId: 9913] [63990] (9)
          SQ P02550 ! SQ P02554
          1. 1jff picpicxrefxrefxref
            complexed with gdp, gtp, mg, ta1, zn
            1. region b:2-245 [62934] picpiclink
          2. 1sa0 picpicxrefxrefxrefxref
            complexed with cn2, gdp, gtp, mg
            1. region b:2-245 [98771] picpiclink
            2. region d:2-245 [98775] picpiclink
          3. 1tvk picpicxrefxref
            complexed with ep, gdp, gtp
            1. region b:2-245 [107364] picpiclink
          4. 1tvk picpicxrefxref
            complexed with ep, gdp, gtp
            1. region a:2-245 [107362] picpiclink
          5. 1z2b picpicxrefxrefxrefxrefxrefxrefxref
            complexed with cn2, gdp, gtp, mg, vlb
            1. region b:2-245 [144727] picpiclink
          6. 1z2b picpicxrefxrefxrefxrefxrefxrefxref
            automatically matched to 1Z2B B:2-245
            complexed with cn2, gdp, gtp, mg, vlb
            1. region d:2-245 [144731] picpiclink
          7. 1sa1 picpicxrefxrefxrefxref
            complexed with gdp, gtp, mg, pod
            1. region b:2-245 [98780] picpiclink
            2. region d:2-245 [98784] picpiclink
          8. 2hxf picpicxrefxrefxrefxref
            automatically matched to d1tvkb1
            complexed with anp, gdp, gtp, mg, ta1; mutant
            1. region b:2-246 [136840] picpiclink
          9. 2hxh picpicxrefxrefxref
            automatically matched to d1tvkb1
            complexed with adp, gdp, gtp, mg, ta1; mutant
            1. region b:2-246 [136851] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk