Structural Classification of Proteins
home mail help root up expand collapse

Family: Cryptochrome/photolyase, N-terminal domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Cryptochrome/photolyase, N-terminal domain [52424]
    3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like
  4. Superfamily: Cryptochrome/photolyase, N-terminal domain [52425]
    link to SUPERFAMILY database - Superfamily
  5. Family: Cryptochrome/photolyase, N-terminal domain [52426]

Protein Domains:

  1. DNA photolyase [52427]
    binds a light-harvesting cofactor
    1. Escherichia coli [TaxId: 562] [52428] (1)
      cofactor is MHTF
      1. 1dnp picpicxref
        complexed with fad, mhf
        1. region a:1-200 [31630] picpiclink
        2. region b:1-200 [31631] picpiclink
    2. Thermus thermophilus [TaxId: 274] [69460] (5)
      1. 2j07 picpicxref
        automatically matched to d1iqra2
        complexed with cl, fad, hdf, po4
        1. region a:2-171 [137892] picpiclink
      2. 2j09 picpicxref
        automatically matched to d1iqra2
        complexed with cl, fad, fmn, po4
        1. region a:2-171 [137896] picpiclink
      3. 1iqr picpicxref
        complexed with fad, po4
        1. region a:2-171 [66276] picpiclink
      4. 1iqu picpicxref
        complexed with thymine
        complexed with fad, po4, tdr
        1. region a:2-171 [71281] picpiclink
      5. 2j08 picpicxref
        automatically matched to d1iqra2
        complexed with cl, fad, irf, po4
        1. region a:2-171 [137894] picpiclink
    3. Synechococcus elongatus [TaxId: 32046] [52429] (7)
      SQ P05327 1-474
      cofactor is HDF
      1. 1owl picpicxref
        complexed with fad, po4
        1. region a:3-204 [93648] picpiclink
      2. 1tez picpicxref
        complexed with fad, hdf, mg, tcp
        1. region a:2-204 [112410] picpiclink
        2. region b:2-204 [112412] picpiclink
        3. region c:2-204 [112414] picpiclink
        4. region d:2-204 [112416] picpiclink
      3. 1qnf picpicxref
        complexed with fad, hdf
        1. region a:1-204 [31632] picpiclink
      4. 1owp picpicxref
        complexed with fad, po4
        1. region a:2-204 [93656] picpiclink
      5. 1own picpicxref
        complexed with fad, po4
        1. region a:2-204 [93652] picpiclink
      6. 1owo picpicxref
        complexed with fad, po4
        1. region a:2-204 [93654] picpiclink
      7. 1owm picpicxref
        complexed with fad, po4
        1. region a:2-204 [93650] picpiclink
  2. Cryptochrome [82367]
    1. Synechocystis sp., pcc 6803 [TaxId: 1143] [82368] (1)
      1. 1np7 picpicxref
        complexed with fad, so4
        1. region a:1-204 [80678] picpiclink
        2. region b:1-204 [80680] picpiclink
    2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [110496] (2)
      SQ Q43125 13-497
      1. 1u3d picpicxref
        complexed with anp, cl, fad, mg, nds
        1. region a:13-197 [107639] picpiclink
      2. 1u3c picpicxref
        complexed with cl, fad, hez, mg, nds
        1. region a:13-197 [107637] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk