Structural Classification of Proteins
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Superfamily: Cryptochrome/photolyase, N-terminal domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Cryptochrome/photolyase, N-terminal domain [52424]
    3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like
  4. Superfamily: Cryptochrome/photolyase, N-terminal domain [52425]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Cryptochrome/photolyase, N-terminal domain [52426] (5)
    1. DNA photolyase [52427]
      binds a light-harvesting cofactor
      1. Escherichia coli [TaxId: 562] [52428] (1)
        cofactor is MHTF
        1. 1dnp picpicxref
          complexed with fad, mhf
          1. region a:1-200 [31630] picpiclink
          2. region b:1-200 [31631] picpiclink
      2. Thermus thermophilus [TaxId: 274] [69460] (5)
        1. 2j07 picpicxref
          automatically matched to d1iqra2
          complexed with cl, fad, hdf, po4
          1. region a:2-171 [137892] picpiclink
        2. 2j09 picpicxref
          automatically matched to d1iqra2
          complexed with cl, fad, fmn, po4
          1. region a:2-171 [137896] picpiclink
        3. 1iqr picpicxref
          complexed with fad, po4
          1. region a:2-171 [66276] picpiclink
        4. 1iqu picpicxref
          complexed with thymine
          complexed with fad, po4, tdr
          1. region a:2-171 [71281] picpiclink
        5. 2j08 picpicxref
          automatically matched to d1iqra2
          complexed with cl, fad, irf, po4
          1. region a:2-171 [137894] picpiclink
      3. Synechococcus elongatus [TaxId: 32046] [52429] (7)
        SQ P05327 1-474
        cofactor is HDF
        1. 1owl picpicxref
          complexed with fad, po4
          1. region a:3-204 [93648] picpiclink
        2. 1tez picpicxref
          complexed with fad, hdf, mg, tcp
          1. region a:2-204 [112410] picpiclink
          2. region b:2-204 [112412] picpiclink
          3. region c:2-204 [112414] picpiclink
          4. region d:2-204 [112416] picpiclink
        3. 1qnf picpicxref
          complexed with fad, hdf
          1. region a:1-204 [31632] picpiclink
        4. 1owp picpicxref
          complexed with fad, po4
          1. region a:2-204 [93656] picpiclink
        5. 1own picpicxref
          complexed with fad, po4
          1. region a:2-204 [93652] picpiclink
        6. 1owo picpicxref
          complexed with fad, po4
          1. region a:2-204 [93654] picpiclink
        7. 1owm picpicxref
          complexed with fad, po4
          1. region a:2-204 [93650] picpiclink
    2. Cryptochrome [82367]
      1. Synechocystis sp., pcc 6803 [TaxId: 1143] [82368] (1)
        1. 1np7 picpicxref
          complexed with fad, so4
          1. region a:1-204 [80678] picpiclink
          2. region b:1-204 [80680] picpiclink
      2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [110496] (2)
        SQ Q43125 13-497
        1. 1u3d picpicxref
          complexed with anp, cl, fad, mg, nds
          1. region a:13-197 [107639] picpiclink
        2. 1u3c picpicxref
          complexed with cl, fad, hez, mg, nds
          1. region a:13-197 [107637] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk