Structural Classification of Proteins
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Superfamily: Uracil-DNA glycosylase-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Uracil-DNA glycosylase-like [52140]
    3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134
  4. Superfamily: Uracil-DNA glycosylase-like [52141]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Uracil-DNA glycosylase [52142] (5)
    1. Uracil-DNA glycosylase [52143]
      1. Human (Homo sapiens) [TaxId: 9606] [52144] (11)
        1. 2hxm picpic
          automatically matched to d1akz__
          complexed with 302
          1. region a:82-304 [136857] picpiclink
        2. 1akz picpic
          mutant
          1. chain a [31007] picpiclink
        3. 1q3f picpic
          complexed with nri, po4, ura
          1. chain a [95671] picpiclink
        4. 1emh picpic
          complexed with p2u; mutant
          1. chain a [31008] picpiclink
        5. 1ssp picpic
          complexed with d1p, ura
          1. chain e [31009] picpiclink
        6. 2oyt picpic
          automatically matched to d1akza_
          complexed with 4mf, aab
          1. region a:82-304 [149079] picpiclink
        7. 1ugh picpicxref
          mutant
          1. chain e [31010] picpiclink
        8. 1emj picpic
          complexed with asu, ura; mutant
          1. chain a [31011] picpiclink
        9. 2ssp picpic
          complexed with d1p; mutant
          1. chain e [31012] picpiclink
        10. 4skn picpic
          complexed with d1p, ura; mutant
          1. chain e [31013] picpiclink
        11. 2oxm picpic
          automatically matched to d1akza_
          complexed with 4mf
          1. region a:82-304 [149059] picpiclink
      2. Atlantic cod (Gadus morhua) [TaxId: 8049] [102212] (1)
        1. 1okb picpic
          complexed with cl, gol; mutant
          1. chain a [93246] picpiclink
          2. chain b [93247] picpiclink
      3. Herpes simplex virus type 1 [TaxId: 10298] [52145] (4)
        1. 1lau picpic
          protein/DNA complex
          1. chain e [31014] picpiclink
        2. 1udh picpic
          complexed with so4, ura
          1. chain a [31015] picpiclink
        3. 1udg picpic
          complexed with so4
          1. chain a [31016] picpiclink
        4. 1udi picpicxref
          1. chain e [31017] picpiclink
      4. Escherichia coli [TaxId: 562] [52146] (12)
        1. 3eug picpic
          complexed with gol; mutant
          1. chain a [31018] picpiclink
        2. 4eug picpic
          mutant
          1. chain a [31019] picpiclink
        3. 2eug picpic
          complexed with ura; mutant
          1. chain a [31020] picpiclink
        4. 1eug picpic
          CASP3
          1. chain a [31021] picpiclink
        5. 5eug picpic
          complexed with ura; mutant
          1. chain a [31022] picpiclink
        6. 1uug picpicxref
          1. chain a [31023] picpiclink
          2. chain c [31024] picpiclink
        7. 2uug picpicxref
          mutant
          1. chain a [31025] picpiclink
          2. chain b [31026] picpiclink
        8. 1flz picpic
          complexed with ura; mutant
          1. chain a [31027] picpiclink
        9. 1lqg picpicxref
          1. chain a [78131] picpiclink
          2. chain b [78132] picpiclink
        10. 1lqm picpicxref
          1. chain a [78141] picpiclink
          2. chain c [78143] picpiclink
          3. chain e [78145] picpiclink
          4. chain g [78147] picpiclink
        11. 1eui picpicxref
          1. chain a [31028] picpiclink
          2. chain b [31029] picpiclink
        12. 1lqj picpic
          1. chain a [78135] picpiclink
          2. chain b [78136] picpiclink
          3. chain c [78137] picpiclink
          4. chain d [78138] picpiclink
      5. Epstein-Barr virus [TaxId: 10376] [159461] (2)
        SQ Q777D9 26-255
        1. 2j8x picpicxrefxref
          complexed with ure
          1. region a:26-255 [145675] picpiclink
        2. 2j8x picpicxrefxref
          automatically matched to 2J8X A:26-255
          complexed with ure
          1. region c:27-255 [145676] picpiclink
  2. Mug-like [52147] (4)
    1. G:T/U mismatch-specific DNA glycosylase, Mug [52148]
      1. Escherichia coli [TaxId: 562] [52149] (4)
        1. 1mug picpic
          complexed with so4
          1. chain a [31030] picpiclink
        2. 1mwi picpic
          DNA product complex
          complexed with d1p
          1. chain a [79574] picpiclink
        3. 1mwj picpic
          DNA pseudo substrate complex
          complexed with du
          1. chain a [79575] picpiclink
        4. 1mtl picpic
          complexed with d1p
          1. chain a [79456] picpiclink
          2. chain b [79457] picpiclink
    2. Thermophilic uracil-DNA glycosylase [89577]
      1. Thermotoga maritima [TaxId: 2336] [89578] (2)
        gene TM0511
        1. 1vk2 picpic
          structural genomics
          complexed with fs4, unl
          1. chain a [100845] picpiclink
        2. 1l9g picpic
          complexed with fs4, so4
          1. chain a [84568] picpiclink
      2. Thermus thermophilus [TaxId: 274] [102213] (2)
        1. 1ui0 picpic
          complexed with fs4, so4, ura
          1. chain a [99411] picpiclink
        2. 1ui1 picpic
          complexed with fs4
          1. chain a [99412] picpiclink
    3. G/T mismatch-specific thymine DNA glycosylase [159462]
      1. Human (Homo sapiens) [TaxId: 9606] [159463] (2)
        SQ Q13569 117-132
        1. 1wyw picpicxref
          complexed with cl, mg, na
          1. region a:117-132 [144566] picpiclink
        2. 2d07 picpicxref
          automatically matched to 1WYW A:117-132
          1. region a:117-132 [145061] picpiclink
  3. Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 [89579] (1)
    1. Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 [89580]
      1. African clawed frog (Xenopus laevis) [TaxId: 8355] [89581] (3)
        1. 1oe4 picpic
          complexed with gol, ipa; mutant
          1. chain a [86895] picpiclink
          2. chain b [86896] picpiclink
        2. 1oe5 picpic
          complexed with dur, epe, gol, ipa, ura; mutant
          1. chain a [86897] picpiclink
          2. chain b [86898] picpiclink
        3. 1oe6 picpic
          complexed with gol, hmu, ipa; mutant
          1. chain a [86899] picpiclink
          2. chain b [86900] picpiclink
  4. AF0587 domain-like [159464] (1)
    a middle domain in the founder protein
    1. Uncharacterized protein AF0587 [159465]
      1. Archaeoglobus fulgidus [TaxId: 2234] [159466] (1)
        SQ O29668 244-383
        1. 2q07 picpicxrefxref
          1. region a:244-393 [149982] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk