Structural Classification of Proteins
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Family: Tail specific protease, catalytic domain

includes N-terminal all-alpha subdomain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: ClpP/crotonase [52095]
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. Superfamily: ClpP/crotonase [52096]
    link to SUPERFAMILY database - Superfamily
  5. Family: Tail specific protease, catalytic domain [52100]
    includes N-terminal all-alpha subdomain

Protein Domains:

  1. Photosystem II D1 C-terminal processing protease [68935]
    1. Algae (Scenedesmus obliquus) [TaxId: 3088] [52102] (4)
      1. 1fc6 picpicxref
        mutant
        1. region a:78-156,a:249-463 [64739] picpiclink
      2. 1fc9 picpicxref
        1. region a:78-156,a:249-463 [64743] picpiclink
      3. 1fc7 picpicxref
        1. region a:78-156,a:249-463 [64741] picpiclink
      4. 1fcf picpicxref
        complexed with sul
        1. region a:77-156,a:249-463 [64745] picpiclink
  2. Tricorn protease [69436]
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [69437] (4)
      1. 1k32 picpicxrefxrefxref
        1. region a:680-762,a:854-1061 [68071] picpiclink
        2. region b:680-762,b:854-1061 [68075] picpiclink
        3. region c:680-762,c:854-1061 [68079] picpiclink
        4. region d:680-762,d:854-1061 [68083] picpiclink
        5. region e:680-762,e:854-1061 [68087] picpiclink
        6. region f:680-762,f:854-1061 [68091] picpiclink
      2. 1n6e picpicxrefxrefxref
        complexed with chm
        1. region a:680-762,a:854-1061 [80152] picpiclink
        2. region g:680-762,g:854-1061 [80164] picpiclink
        3. region c:680-762,c:854-1061 [80156] picpiclink
        4. region i:680-762,i:854-1061 [80168] picpiclink
        5. region e:680-762,e:854-1061 [80160] picpiclink
        6. region k:680-762,k:854-1061 [80172] picpiclink
      3. 1n6f picpicxrefxrefxref
        complexed with dkt
        1. region a:680-762,a:854-1061 [80176] picpiclink
        2. region b:680-762,b:854-1061 [80180] picpiclink
        3. region c:680-762,c:854-1061 [80184] picpiclink
        4. region d:680-762,d:854-1061 [80188] picpiclink
        5. region e:680-762,e:854-1061 [80192] picpiclink
        6. region f:680-762,f:854-1061 [80196] picpiclink
      4. 1n6d picpicxrefxrefxref
        complexed with chm, d10
        1. region a:680-762,a:854-1061 [80128] picpiclink
        2. region b:680-762,b:854-1061 [80132] picpiclink
        3. region c:680-762,c:854-1061 [80136] picpiclink
        4. region d:680-762,d:854-1061 [80140] picpiclink
        5. region e:680-762,e:854-1061 [80144] picpiclink
        6. region f:680-762,f:854-1061 [80148] picpiclink
  3. Interphotoreceptor retinoid-binding protein IRBP [69438]
    very similar to the tail-specific protease domain; lacks the PDZ insertion domain and hydrolytic activity
    1. African clawed frog (Xenopus laevis) [TaxId: 8355] [69439] (1)
      1. 1j7x picpic
        1. chain a [66425] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk