Structural Classification of Proteins
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Fold: Small protein B (SmpB)

barrel, closed; n=6, S=8, greek-key, partial similarity to the OB-fold

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Small protein B (SmpB) [74981]
    barrel, closed; n=6, S=8, greek-key, partial similarity to the OB-fold

Superfamilies:

  1. Small protein B (SmpB) [74982] (1)
    link to SUPERFAMILY database - Superfamily
    1. Small protein B (SmpB) [74983] (2)
      1. Small protein B (SmpB) [74984]
        tmRNA-binding protein; SsrA-binding protein
        1. Aquifex aeolicus [TaxId: 63363] [74985] (5)
          1. 1p6v picpic
            complexed with tRNA domain of tmRNA
            1. chain a [94191] picpiclink
            2. chain c [94192] picpiclink
          2. 1k8h picpic
            1. chain a [72176] picpiclink
          3. 1zc8 picpicxrefxrefxref
            automatically matched to d1k8ha_
            complexed with du
            1. region k:1-130 [124892] picpiclink
          4. 2ob7 picpic
            automatically matched to d1k8ha_
            1. region b:3-130 [139004] picpiclink
          5. 2ob7 picpic
            automatically matched to d1k8ha_
            1. region c:3-124 [139005] picpiclink
        2. Thermus thermophilus [TaxId: 274] [82130] (6)
          SQ Q8RR57 4-123
          1. 1wjx picpic
            Structural genomics target
            complexed with k
            1. chain a [114716] picpiclink
          2. 2czj picpic
            automatically matched to d1j1ha_
            complexed with 5mu, psu
            1. region a:2-123 [131051] picpiclink
          3. 2czj picpic
            automatically matched to d1j1ha_
            complexed with 5mu, psu
            1. region c:2-123 [131052] picpiclink
          4. 2czj picpic
            automatically matched to d1j1ha_
            complexed with 5mu, psu
            1. region e:2-123 [131053] picpiclink
          5. 2czj picpic
            automatically matched to d1j1ha_
            complexed with 5mu, psu
            1. region g:4-123 [131054] picpiclink
          6. 1j1h picpic
            1. chain a [77056] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk