Structural Classification of Proteins
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Fold: Phage tail proteins

core: barrel; n=6, S=10; greek-key; topologically similar to the FMN-binding split barrel

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Phage tail proteins [69278]
    core: barrel; n=6, S=10; greek-key; topologically similar to the FMN-binding split barrel

Superfamilies:

  1. Phage tail proteins [69279] (3)
    link to SUPERFAMILY database - Superfamily
    1. Baseplate protein-like [69280] (5)
      duplication: consists of two similar barrel domains that differ by the first strand directions; the barrels are differently decorated by alpha+beta insertions
      1. Baseplate structural protein gp27 [69281]
        1. Bacteriophage T4 [TaxId: 10665] [69282] (3)
          1. 1k28 picpicxrefxrefxref
            complexed with k, po4
            1. region d:4-200 [68052] picpiclink
            2. region d:201-376 [68053] picpiclink
          2. 1wth picpic
            automatically matched to d1k28d1
            complexed with k, po4; mutant
            1. region d:4-200 [121268] picpiclink
          3. 1wth picpic
            automatically matched to d1k28d2
            complexed with k, po4; mutant
            1. region d:201-376 [121269] picpiclink
      2. Hypothetical protein c3393 [159177]
        probable phage-related protein; similar to fusion of the T4 phage gp27 and (a part of) gp5
        1. Escherichia coli o6 [TaxId: 217992] [159178] (2)
          SQ Q8FED2 15-201! SQ Q8FED2 202-377
          1. 2p5z picpicxref
            1. region x:15-201 [149264] picpiclink
          2. 2p5z picpicxref
            1. region x:202-377 [149265] picpiclink
      3. Baseplate protein gpP [159179]
        43 kda tail protein; Pfam 06893
        1. Neisseria meningitidis [TaxId: 487] [159180] (4)
          SQ Q9JZC8 179-347! SQ Q9JZC8 6-178
          unidentified prophage?
          1. 3d37 picpic
            complexed with cl
            1. region a:6-178 [157269] picpiclink
          2. 3d37 picpic
            complexed with cl
            1. region a:179-347 [157270] picpiclink
          3. 3d37 picpic
            automatically matched to 3D37 A:6-178
            complexed with cl
            1. region b:6-178 [157271] picpiclink
          4. 3d37 picpic
            automatically matched to 3D37 A:179-347
            complexed with cl
            1. region b:179-347 [157272] picpiclink
        2. Bacteriophage mu [TaxId: 10677] [159181] (2)
          SQ P08558 177-346! SQ P08558 3-176
          1. 1wru picpic
            1. region a:177-346 [145831] picpiclink
          2. 1wru picpic
            1. region a:3-176 [145832] picpiclink
        3. Shewanella oneidensis [TaxId: 70863] [159182] (12)
          SQ Q8EDP4 181-348! SQ Q8EDP4 2-180
          Prophage MuSo2
          1. 3cdd picpic
            1. region a:181-348 [156500] picpiclink
          2. 3cdd picpic
            1. region a:2-180 [156501] picpiclink
          3. 3cdd picpic
            automatically matched to 3CDD A:181-348
            1. region b:181-345 [156502] picpiclink
          4. 3cdd picpic
            automatically matched to 3CDD A:2-180
            1. region b:3-180 [156503] picpiclink
          5. 3cdd picpic
            automatically matched to 3CDD A:181-348
            1. region c:181-343 [156504] picpiclink
          6. 3cdd picpic
            automatically matched to 3CDD A:2-180
            1. region c:3-180 [156505] picpiclink
          7. 3cdd picpic
            automatically matched to 3CDD A:181-348
            1. region d:181-343 [156506] picpiclink
          8. 3cdd picpic
            automatically matched to 3CDD A:2-180
            1. region d:2-180 [156507] picpiclink
          9. 3cdd picpic
            automatically matched to 3CDD A:181-348
            1. region e:181-343 [156508] picpiclink
          10. 3cdd picpic
            automatically matched to 3CDD A:2-180
            1. region e:2-180 [156509] picpiclink
          11. 3cdd picpic
            automatically matched to 3CDD A:181-348
            1. region f:181-345 [156510] picpiclink
          12. 3cdd picpic
            automatically matched to 3CDD A:2-180
            1. region f:3-180 [156511] picpiclink
    2. gpFII-like [74966] (2)
      similar to the N-terminal barrel of T4 gp27
      1. Tail attachment protein gpF3 [74967]
        1. Bacteriophage lambda [TaxId: 10710] [74968] (1)
          1. 1k0h picpic
            1. chain a [71975] picpiclink
      2. Gifsy-2 prophage protein STM1035 [159183]
        ATP-binding sugar transporter-like protein
        1. Salmonella typhimurium [TaxId: 90371] [159184] (1)
          SQ Q8ZQ92 1-93
          1. 2pp6 picpic
            1. region a:1-93 [149728] picpiclink
    3. XkdM-like [159185] (1)
      Pfam 09393; DUF2001
      1. Phage-like element PBSX protein XkdM [159186]
        1. Bacillus subtilis [TaxId: 1423] [159187] (2)
          SQ P54332 5-143
          1. 2guj picpic
            1. region a:5-143 [147180] picpiclink
          2. 2guj picpic
            automatically matched to 2GUJ A:5-143
            1. region b:5-143 [147181] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk