Structural Classification of Proteins
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Family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Elongation factor/aminomethyltransferase common domain [50464]
    barrel, closed; n=6, S=10; greek-key
  4. Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465]
    probably related to the second domain and its superfamiy by a circular permutation
    link to SUPERFAMILY database - Superfamily
  5. Family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50466]

Protein Domains:

  1. Elongation factor Tu (EF-Tu) [50467]
    1. Escherichia coli [TaxId: 562] [50468] (8)
      SQ P02990
      1. 1efc picpicxrefxref
        complexed with gdp, mg
        1. region a:297-393 [25720] picpiclink
        2. region b:297-393 [25721] picpiclink
      2. 1dg1 picpicxrefxref
        1. region g:297-393 [25724] picpiclink
        2. region h:297-393 [25725] picpiclink
      3. 1efu picpicxrefxrefxrefxref
        1. region a:297-393 [25722] picpiclink
        2. region c:297-393 [25723] picpiclink
      4. 2bvn picpicxrefxrefxrefxref
        automatically matched to d1d8ta2
        complexed with enx, gnp, mg
        1. region a:297-392 [129283] picpiclink
      5. 2bvn picpicxrefxrefxrefxref
        automatically matched to d1d8ta2
        complexed with enx, gnp, mg
        1. region b:297-392 [129286] picpiclink
      6. 1d8t picpicxrefxref
        complexed with ace, gdp, gea, mg
        1. region a:297-393 [25726] picpiclink
        2. region b:297-393 [25727] picpiclink
      7. 2fx3 picpicxrefxref
        automatically matched to d1d8ta2
        complexed with gdp, mg
        1. region a:297-392 [134272] picpiclink
      8. 1ob2 picpicxrefxref
        complexed with 2mg, 5mc, 7mg, gnp, h2u, kir, m2g, mad, mg, omc, omg, pha, psu, suc, yg
        1. region a:297-393 [103901] picpiclink
    2. Thermus aquaticus [TaxId: 271] [50469] (4)
      1. 1b23 picpicxrefxref
        complexed with aac, gnp, h2u, mg, mia, psu, s4u, so4
        1. region p:313-405 [25729] picpiclink
      2. 1eft picpicxrefxref
        complexed with gnp, mg
        1. region a:313-405 [25728] picpiclink
      3. 1ttt picpicxrefxref
        protein/tRNA complex; complexed with 1ma, 2mg, 5mc, 5mu, 7mg, gnp, h2u, m2g, mg, omc, omg, psu, yg
        1. region a:314-405 [25730] picpiclink
        2. region b:313-405 [25731] picpiclink
        3. region c:313-405 [25732] picpiclink
      4. 1tui picpicxrefxref
        complexed with gdp, mg
        1. region a:314-405 [25733] picpiclink
        2. region b:313-405 [25734] picpiclink
        3. region c:313-405 [25735] picpiclink
    3. Thermus thermophilus [TaxId: 274] [50470] (9)
      1. 2c78 picpicxrefxref
        automatically matched to d1aipa2
        complexed with gnp, mg, pul
        1. region a:313-405 [130038] picpiclink
      2. 2c77 picpicxrefxref
        automatically matched to d1aipa2
        complexed with gea, gnp, mg, peg
        1. region a:313-405 [130035] picpiclink
      3. 1exm picpicxrefxref
        complexed with gnp, mg
        1. region a:313-405 [25736] picpiclink
      4. 1ha3 picpicxrefxref
        complexed with bme, gdp, mau, mg
        1. region a:313-405 [60870] picpiclink
        2. region b:313-405 [60873] picpiclink
      5. 1aip picpicxrefxrefxrefxref
        1. region a:313-405 [25737] picpiclink
        2. region b:313-405 [25738] picpiclink
        3. region e:313-405 [25739] picpiclink
        4. region f:313-405 [25740] picpiclink
      6. 1ob5 picpicxrefxrefxrefxrefxrefxref
        automatically matched to d1aipa2
        complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
        1. region a:313-405 [118692] picpiclink
      7. 1ob5 picpicxrefxrefxrefxrefxrefxref
        automatically matched to d1aipa2
        complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
        1. region c:313-405 [118695] picpiclink
      8. 1ob5 picpicxrefxrefxrefxrefxrefxref
        automatically matched to d1aipa2
        complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
        1. region e:313-405 [118698] picpiclink
      9. 1zc8 picpicxrefxrefxref
        automatically matched to d1aipa2
        complexed with du
        1. region y:313-405 [124894] picpiclink
    4. Cow (Bos taurus), mitochondrial [TaxId: 9913] [50471] (2)
      SQ P49410 56-452
      1. 1d2e picpicxrefxref
        complexed with gdp, mo2, mo4
        1. region a:349-451 [25741] picpiclink
        2. region b:349-451 [25742] picpiclink
        3. region c:349-451 [25743] picpiclink
        4. region d:349-451 [25744] picpiclink
      2. 1xb2 picpicxrefxrefxrefxref
        1. region a:349-452 [115055] picpiclink
  2. Elongation factor eEF-1alpha, C-terminal domain [50472]
    eukaryotic and archaeal homologue of EF-Tu
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [50473] (6)
      1. 1f60 picpicxrefxrefxref
        1. region a:335-441 [25745] picpiclink
      2. 2b7c picpicxrefxrefxref
        automatically matched to d1g7ca2
        mutant
        1. region a:335-441 [128031] picpiclink
      3. 1g7c picpicxrefxrefxref
        complexed with 5gp
        1. region a:335-443 [25746] picpiclink
      4. 1ije picpicxrefxrefxref
        complexed with gdp
        1. region a:335-441 [62486] picpiclink
      5. 2b7b picpicxrefxrefxref
        automatically matched to d1g7ca2
        complexed with gdp; mutant
        1. region a:335-441 [128028] picpiclink
      6. 1ijf picpicxrefxrefxref
        complexed with gdp, mg
        1. region a:335-441 [62490] picpiclink
    2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [69277] (2)
      SQ P35021
      1. 1jny picpicxrefxref
        complexed with gdp
        1. region a:323-429 [66983] picpiclink
        2. region b:323-430 [66986] picpiclink
      2. 1skq picpicxrefxref
        complexed with gdp, mg
        1. region a:323-430 [105679] picpiclink
        2. region b:323-430 [105682] picpiclink
  3. Initiation factor eIF2 gamma subunit [74964]
    1. Archaeon Pyrococcus abyssi [TaxId: 29292] [74965] (5)
      1. 1kk1 picpicxrefxref
        complexed with gnp, mg, zn; mutant
        1. region a:322-410 [72635] picpiclink
      2. 1kk3 picpicxrefxref
        complexed with gdp, mg, zn
        1. region a:322-410 [72641] picpiclink
      3. 1kjz picpicxrefxref
        complexed with zn; mutant
        1. region a:322-410 [72629] picpiclink
      4. 1kk0 picpicxrefxref
        complexed with mse, zn
        1. region a:322-410 [72632] picpiclink
      5. 1kk2 picpicxrefxref
        complexed with gdp, mg, zn; mutant
        1. region a:322-410 [72638] picpiclink
    2. Archaeon Methanococcus jannaschii [TaxId: 2190] [101789] (1)
      1. 1s0u picpicxrefxref
        structural genomics
        complexed with zn
        1. region a:348-437 [98303] picpiclink
    3. Sulfolobus solfataricus [TaxId: 2287] [141344] (6)
      SQ Q980A5 321-415
      1. 2qn6 picpicxrefxrefxref
        automatically matched to d2ahoa2
        complexed with gdp, mg
        1. region a:321-415 [150912] picpiclink
      2. 2pmd picpicxrefxrefxrefxref
        automatically matched to d2ahoa2
        complexed with gdp, gnp, ppv
        1. region a:321-415 [149664] picpiclink
      3. 2pmd picpicxrefxrefxrefxref
        automatically matched to d2ahoa2
        complexed with gdp, gnp, ppv
        1. region b:321-415 [149667] picpiclink
      4. 2plf picpicxrefxref
        automatically matched to d2ahoa2
        1. region a:321-415 [149626] picpiclink
      5. 2aho picpicxrefxrefxrefxrefxref
        complexed with gnp, mg, zn
        1. region a:321-415 [126768] picpiclink
      6. 2qmu picpicxrefxrefxref
        automatically matched to d2ahoa2
        complexed with gdp, po4, zn
        1. region a:321-415 [150895] picpiclink
  4. Eukaryotic peptide chain release factor ERF2, C-terminal domain [110229]
    1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [110230] (3)
      SQ O74718
      1. 1r5b picpicxrefxref
        1. region a:555-622 [104804] picpiclink
      2. 1r5n picpicxrefxref
        complexed with gdp
        1. region a:555-622 [104807] picpiclink
      3. 1r5o picpicxrefxref
        complexed with gnp
        1. region a:555-622 [104810] picpiclink
  5. Elongation factor SelB, domain 3 [117223]
    1. Methanococcus maripaludis [TaxId: 39152] [117224] (3)
      SQ Q8J307
      1. 1wb1 picpicxrefxref
        complexed with cmh, dxc, gdp, mg, so4
        1. region a:272-387 [114438] picpiclink
        2. region b:272-387 [114441] picpiclink
        3. region c:272-387 [114445] picpiclink
        4. region d:272-387 [114448] picpiclink
      2. 1wb2 picpicxrefxref
        complexed with cmh, dxc, so4
        1. region a:272-387 [114452] picpiclink
        2. region b:272-387 [114455] picpiclink
        3. region c:272-387 [114459] picpiclink
        4. region d:272-387 [114462] picpiclink
      3. 1wb3 picpicxrefxref
        complexed with cmh, dxc, gnp, mg, so4
        1. region a:272-387 [114466] picpiclink
        2. region b:272-387 [114469] picpiclink
        3. region c:272-387 [114473] picpiclink
        4. region d:272-387 [114476] picpiclink
  6. Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain [141345]
    1. Pseudomonas syringae pv. tomato [TaxId: 323] [141346] (1)
      SQ Q87WW1 330-434
      1. 1zun picpicxrefxrefxref
        complexed with ags, gdp, mg, na
        1. region b:330-434 [125678] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk