Structural Classification of Proteins
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Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain

probably related to the second domain and its superfamiy by a circular permutation
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Elongation factor/aminomethyltransferase common domain [50464]
    barrel, closed; n=6, S=10; greek-key
  4. Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465]
    probably related to the second domain and its superfamiy by a circular permutation
    link to SUPERFAMILY database - Superfamily

Families:

  1. EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50466] (12)
    1. Elongation factor Tu (EF-Tu) [50467]
      1. Escherichia coli [TaxId: 562] [50468] (8)
        SQ P02990
        1. 1efc picpicxrefxref
          complexed with gdp, mg
          1. region a:297-393 [25720] picpiclink
          2. region b:297-393 [25721] picpiclink
        2. 1dg1 picpicxrefxref
          1. region g:297-393 [25724] picpiclink
          2. region h:297-393 [25725] picpiclink
        3. 1efu picpicxrefxrefxrefxref
          1. region a:297-393 [25722] picpiclink
          2. region c:297-393 [25723] picpiclink
        4. 2bvn picpicxrefxrefxrefxref
          automatically matched to d1d8ta2
          complexed with enx, gnp, mg
          1. region a:297-392 [129283] picpiclink
        5. 2bvn picpicxrefxrefxrefxref
          automatically matched to d1d8ta2
          complexed with enx, gnp, mg
          1. region b:297-392 [129286] picpiclink
        6. 1d8t picpicxrefxref
          complexed with ace, gdp, gea, mg
          1. region a:297-393 [25726] picpiclink
          2. region b:297-393 [25727] picpiclink
        7. 2fx3 picpicxrefxref
          automatically matched to d1d8ta2
          complexed with gdp, mg
          1. region a:297-392 [134272] picpiclink
        8. 1ob2 picpicxrefxref
          complexed with 2mg, 5mc, 7mg, gnp, h2u, kir, m2g, mad, mg, omc, omg, pha, psu, suc, yg
          1. region a:297-393 [103901] picpiclink
      2. Thermus aquaticus [TaxId: 271] [50469] (4)
        1. 1b23 picpicxrefxref
          complexed with aac, gnp, h2u, mg, mia, psu, s4u, so4
          1. region p:313-405 [25729] picpiclink
        2. 1eft picpicxrefxref
          complexed with gnp, mg
          1. region a:313-405 [25728] picpiclink
        3. 1ttt picpicxrefxref
          protein/tRNA complex; complexed with 1ma, 2mg, 5mc, 5mu, 7mg, gnp, h2u, m2g, mg, omc, omg, psu, yg
          1. region a:314-405 [25730] picpiclink
          2. region b:313-405 [25731] picpiclink
          3. region c:313-405 [25732] picpiclink
        4. 1tui picpicxrefxref
          complexed with gdp, mg
          1. region a:314-405 [25733] picpiclink
          2. region b:313-405 [25734] picpiclink
          3. region c:313-405 [25735] picpiclink
      3. Thermus thermophilus [TaxId: 274] [50470] (9)
        1. 2c78 picpicxrefxref
          automatically matched to d1aipa2
          complexed with gnp, mg, pul
          1. region a:313-405 [130038] picpiclink
        2. 2c77 picpicxrefxref
          automatically matched to d1aipa2
          complexed with gea, gnp, mg, peg
          1. region a:313-405 [130035] picpiclink
        3. 1exm picpicxrefxref
          complexed with gnp, mg
          1. region a:313-405 [25736] picpiclink
        4. 1ha3 picpicxrefxref
          complexed with bme, gdp, mau, mg
          1. region a:313-405 [60870] picpiclink
          2. region b:313-405 [60873] picpiclink
        5. 1aip picpicxrefxrefxrefxref
          1. region a:313-405 [25737] picpiclink
          2. region b:313-405 [25738] picpiclink
          3. region e:313-405 [25739] picpiclink
          4. region f:313-405 [25740] picpiclink
        6. 1ob5 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1aipa2
          complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
          1. region a:313-405 [118692] picpiclink
        7. 1ob5 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1aipa2
          complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
          1. region c:313-405 [118695] picpiclink
        8. 1ob5 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1aipa2
          complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
          1. region e:313-405 [118698] picpiclink
        9. 1zc8 picpicxrefxrefxref
          automatically matched to d1aipa2
          complexed with du
          1. region y:313-405 [124894] picpiclink
      4. Cow (Bos taurus), mitochondrial [TaxId: 9913] [50471] (2)
        SQ P49410 56-452
        1. 1d2e picpicxrefxref
          complexed with gdp, mo2, mo4
          1. region a:349-451 [25741] picpiclink
          2. region b:349-451 [25742] picpiclink
          3. region c:349-451 [25743] picpiclink
          4. region d:349-451 [25744] picpiclink
        2. 1xb2 picpicxrefxrefxrefxref
          1. region a:349-452 [115055] picpiclink
    2. Elongation factor eEF-1alpha, C-terminal domain [50472]
      eukaryotic and archaeal homologue of EF-Tu
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [50473] (6)
        1. 1f60 picpicxrefxrefxref
          1. region a:335-441 [25745] picpiclink
        2. 2b7c picpicxrefxrefxref
          automatically matched to d1g7ca2
          mutant
          1. region a:335-441 [128031] picpiclink
        3. 1g7c picpicxrefxrefxref
          complexed with 5gp
          1. region a:335-443 [25746] picpiclink
        4. 1ije picpicxrefxrefxref
          complexed with gdp
          1. region a:335-441 [62486] picpiclink
        5. 2b7b picpicxrefxrefxref
          automatically matched to d1g7ca2
          complexed with gdp; mutant
          1. region a:335-441 [128028] picpiclink
        6. 1ijf picpicxrefxrefxref
          complexed with gdp, mg
          1. region a:335-441 [62490] picpiclink
      2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [69277] (2)
        SQ P35021
        1. 1jny picpicxrefxref
          complexed with gdp
          1. region a:323-429 [66983] picpiclink
          2. region b:323-430 [66986] picpiclink
        2. 1skq picpicxrefxref
          complexed with gdp, mg
          1. region a:323-430 [105679] picpiclink
          2. region b:323-430 [105682] picpiclink
    3. Initiation factor eIF2 gamma subunit [74964]
      1. Archaeon Pyrococcus abyssi [TaxId: 29292] [74965] (5)
        1. 1kk1 picpicxrefxref
          complexed with gnp, mg, zn; mutant
          1. region a:322-410 [72635] picpiclink
        2. 1kk3 picpicxrefxref
          complexed with gdp, mg, zn
          1. region a:322-410 [72641] picpiclink
        3. 1kjz picpicxrefxref
          complexed with zn; mutant
          1. region a:322-410 [72629] picpiclink
        4. 1kk0 picpicxrefxref
          complexed with mse, zn
          1. region a:322-410 [72632] picpiclink
        5. 1kk2 picpicxrefxref
          complexed with gdp, mg, zn; mutant
          1. region a:322-410 [72638] picpiclink
      2. Archaeon Methanococcus jannaschii [TaxId: 2190] [101789] (1)
        1. 1s0u picpicxrefxref
          structural genomics
          complexed with zn
          1. region a:348-437 [98303] picpiclink
      3. Sulfolobus solfataricus [TaxId: 2287] [141344] (6)
        SQ Q980A5 321-415
        1. 2qn6 picpicxrefxrefxref
          automatically matched to d2ahoa2
          complexed with gdp, mg
          1. region a:321-415 [150912] picpiclink
        2. 2pmd picpicxrefxrefxrefxref
          automatically matched to d2ahoa2
          complexed with gdp, gnp, ppv
          1. region a:321-415 [149664] picpiclink
        3. 2pmd picpicxrefxrefxrefxref
          automatically matched to d2ahoa2
          complexed with gdp, gnp, ppv
          1. region b:321-415 [149667] picpiclink
        4. 2plf picpicxrefxref
          automatically matched to d2ahoa2
          1. region a:321-415 [149626] picpiclink
        5. 2aho picpicxrefxrefxrefxrefxref
          complexed with gnp, mg, zn
          1. region a:321-415 [126768] picpiclink
        6. 2qmu picpicxrefxrefxref
          automatically matched to d2ahoa2
          complexed with gdp, po4, zn
          1. region a:321-415 [150895] picpiclink
    4. Eukaryotic peptide chain release factor ERF2, C-terminal domain [110229]
      1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [110230] (3)
        SQ O74718
        1. 1r5b picpicxrefxref
          1. region a:555-622 [104804] picpiclink
        2. 1r5n picpicxrefxref
          complexed with gdp
          1. region a:555-622 [104807] picpiclink
        3. 1r5o picpicxrefxref
          complexed with gnp
          1. region a:555-622 [104810] picpiclink
    5. Elongation factor SelB, domain 3 [117223]
      1. Methanococcus maripaludis [TaxId: 39152] [117224] (3)
        SQ Q8J307
        1. 1wb1 picpicxrefxref
          complexed with cmh, dxc, gdp, mg, so4
          1. region a:272-387 [114438] picpiclink
          2. region b:272-387 [114441] picpiclink
          3. region c:272-387 [114445] picpiclink
          4. region d:272-387 [114448] picpiclink
        2. 1wb2 picpicxrefxref
          complexed with cmh, dxc, so4
          1. region a:272-387 [114452] picpiclink
          2. region b:272-387 [114455] picpiclink
          3. region c:272-387 [114459] picpiclink
          4. region d:272-387 [114462] picpiclink
        3. 1wb3 picpicxrefxref
          complexed with cmh, dxc, gnp, mg, so4
          1. region a:272-387 [114466] picpiclink
          2. region b:272-387 [114469] picpiclink
          3. region c:272-387 [114473] picpiclink
          4. region d:272-387 [114476] picpiclink
    6. Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain [141345]
      1. Pseudomonas syringae pv. tomato [TaxId: 323] [141346] (1)
        SQ Q87WW1 330-434
        1. 1zun picpicxrefxrefxref
          complexed with ags, gdp, mg, na
          1. region b:330-434 [125678] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk