Structural Classification of Proteins
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Superfamily: Pentapeptide repeat-like

superhelix turns are made of four short strands each; duplication: the sequence pentapeptide repeats correspond to individual strands
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Single-stranded right-handed beta-helix [51125]
    superhelix turns are made of parallel beta-strands and (short) turns
  4. Superfamily: Pentapeptide repeat-like [141571]
    superhelix turns are made of four short strands each; duplication: the sequence pentapeptide repeats correspond to individual strands
    link to SUPERFAMILY database - Superfamily

Families:

  1. Pentapeptide repeats [141572] (3)
    Pfam 00805 (covers eight repeats or two full superhelical turns)
    1. Hypothetical protein Rv3361c (MT3469) [141573]
      1. Mycobacterium tuberculosis [TaxId: 1773] [141574] (8)
        SQ O50390 2-182
        1. 2bm5 picpic
          automatically matched to 2BM4 A:2-182
          complexed with so4
          1. region a:2-182 [128765] picpiclink
        2. 2bm5 picpic
          automatically matched to 2BM4 A:2-182
          complexed with so4
          1. region b:2-181 [128766] picpiclink
        3. 2bm4 picpic
          1. region a:2-182 [128763] picpiclink
        4. 2bm4 picpic
          automatically matched to 2BM4 A:2-182
          1. region b:3-182 [128764] picpiclink
        5. 2bm6 picpic
          automatically matched to 2BM4 A:2-182
          complexed with cs
          1. region a:3-181 [128767] picpiclink
        6. 2bm7 picpic
          automatically matched to 2BM4 A:2-182
          1. region a:3-181 [128768] picpiclink
        7. 2bm7 picpic
          automatically matched to 2BM4 A:2-182
          1. region b:3-182 [128769] picpiclink
        8. 2bm7 picpic
          automatically matched to 2BM4 A:2-182
          1. region c:4-182 [128770] picpiclink
    2. NP275-NP276 [141575]
      Two consecuitive ORFs in the same frame that maintain the sequence periodicity; probable single ORF disrupted by the nonsense mutation
      1. Nostoc punctiforme [TaxId: 272131] [141576] (3)
        1. 2j8k picpic
          'Fusion form' produced by the mutation of the intervening stop codon
          complexed with mes, so4; mutant
          1. region a:1-175 [138141] picpiclink
        2. 2j8i picpic
          'Truncated form', NP275 only
          complexed with cl
          1. region a:1-98 [138139] picpiclink
        3. 2j8i picpic
          automatically matched to 2J8I A:1-98
          complexed with cl
          1. region b:1-98 [138140] picpiclink
    3. Lumenal RFR-domain protein [141577]
      1. Cyanothece sp. atcc 51142 [TaxId: 43989] [141578] (2)
        1. 2f3l picpic
          1. region a:7-138 [132872] picpiclink
        2. 2g0y picpic
          automatically matched to 2F3L A:7-138
          complexed with ca
          1. region a:7-138 [134506] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk