Structural Classification of Proteins
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Family: Galacturonase

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Single-stranded right-handed beta-helix [51125]
    superhelix turns are made of parallel beta-strands and (short) turns
  4. Superfamily: Pectin lyase-like [51126]
    superhelix turns are made of 3 strands each
    link to SUPERFAMILY database - Superfamily
  5. Family: Galacturonase [51137]

Protein Domains:

  1. Rhamnogalacturonase A [51138]
    1. Aspergillus aculeatus [TaxId: 5053] [51139] (1)
      1. 1rmg picpic
        complexed with man, nag
        1. chain a [28029] picpiclink
  2. Polygalacturonase [51140]
    1. Erwinia carotovora, subsp. carotovora [TaxId: 554] [51141] (1)
      1. 1bhe picpic
        CASP3
        1. chain a [28030] picpiclink
    2. Fungus (Aspergillus aculeatus) [TaxId: 5053] [63847] (2)
      1. 1ia5 picpic
        complexed with man, nag
        1. chain a [62111] picpiclink
      2. 1ib4 picpic
        complexed with cd, man, nag
        1. chain a [62143] picpiclink
        2. chain b [62144] picpiclink
    3. Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369] [75025] (3)
      1. 1k5c picpic
        complexed with cl, gol, nag
        1. chain a [72076] picpiclink
      2. 1kcc picpic
        complexed with cl, gtr, na, nag
        1. chain a [72298] picpiclink
      3. 1kcd picpic
        complexed with cl, gtr, nag
        1. chain a [72299] picpiclink
    4. Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061] [101950] (1)
      1. 1nhc picpic
        complexed with gol, man, nag, so4
        1. chain a [91879] picpiclink
        2. chain b [91880] picpiclink
        3. chain c [91881] picpiclink
        4. chain d [91882] picpiclink
        5. chain e [91883] picpiclink
        6. chain f [91884] picpiclink
    5. Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061] [63382] (1)
      1. 1czf picpic
        1. chain a [28031] picpiclink
        2. chain b [28032] picpiclink
    6. Fusarium moniliforme [TaxId: 117187] [69332] (1)
      1. 1hg8 picpic
        complexed with nag
        1. chain a [65830] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk